View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1690-Insertion-12 (Length: 212)

Name: NF1690-Insertion-12
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1690-Insertion-12
NF1690-Insertion-12
[»] chr8 (9 HSPs)
chr8 (7-208)||(2017820-2018021)
chr8 (9-121)||(1963793-1963906)
chr8 (7-115)||(2014529-2014638)
chr8 (26-97)||(2011143-2011214)
chr8 (26-87)||(1965480-1965541)
chr8 (26-97)||(1969422-1969493)
chr8 (26-97)||(2004148-2004219)
chr8 (26-97)||(2007528-2007599)
chr8 (26-102)||(2437216-2437292)
[»] chr1 (2 HSPs)
chr1 (54-87)||(5903014-5903047)
chr1 (27-87)||(5906471-5906531)
[»] chr4 (1 HSPs)
chr4 (54-82)||(5890603-5890631)


Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 2018021 - 2017820
Alignment:
Q  7 atctgctaatagtgcacataaagatgatggatcttttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaacaagttgtat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2018021 atctgctaatagtgcacataaagatgatggatcttttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaacaagttgtat 2017922  T
Q  107 gacaatatgtattatgagatcaagatcaaggagaaaaaggagagaaaactgaaatgttgattcattgatctgaaagtagatttagttacatgaatcctat 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2017921 gacaatatgtattatgagatcaagatcaaggagaaaaaggagagaaaactgaaatgttgattcattgatctgtaagtagatttagttacatgaatcctat 2017822  T
Q  207 tt 208  Q
    ||    
T  2017821 tt 2017820  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 1963793 - 1963906
Alignment:
Q  9 ctgctaatagtgcacataaagatgatggatcttttacaaagacactttctcaattagcactcaagtggag-aaatttggtatagaaaaacaagttgtatg 107  Q
    |||||| ||||| ||||||||| ||||| |||  ||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| ||||    
T  1963793 ctgctagtagtgtacataaagaagatggttctactacaaagactctttctcaattagcactcaagtggagtaactttggtatagaaaaacaagttttatg 1963892  T
Q  108 acaatatgtattat 121  Q
    ||||||||||||||    
T  1963893 acaatatgtattat 1963906  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 2014638 - 2014529
Alignment:
Q  7 atctgctaatagtgcacataaagatgatggatcttttacaaagacactttctcaattagcactcaagtggagaaa-tttggtatagaaaaacaagttgta 105  Q
    ||||||||||||||||||||||||||| || |||  ||||||||| |||||||||||||  || ||||||||||| |||||||| ||||||||||||  |    
T  2014638 atctgctaatagtgcacataaagatgacgggtctgctacaaagactctttctcaattagttcttaagtggagaaactttggtattgaaaaacaagtttaa 2014539  T
Q  106 tgacaatatg 115  Q
    ||||||||||    
T  2014538 tgacaatatg 2014529  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 2011214 - 2011143
Alignment:
Q  26 aaagatgatggatcttttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaac 97  Q
    ||||| |||||||||| |||||||||  ||||||||||| ||||||||||||||||||||||  ||||||||    
T  2011214 aaagaagatggatcttctacaaagactatttctcaattaacactcaagtggagaaatttggtgcagaaaaac 2011143  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 1965480 - 1965541
Alignment:
Q  26 aaagatgatggatcttttacaaagacactttctcaattagcactcaagtggagaaatttggt 87  Q
    ||||| |||||||||| |||||||||  | ||||||||| ||||||||||||||||||||||    
T  1965480 aaagaagatggatcttctacaaagactatatctcaattaacactcaagtggagaaatttggt 1965541  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 1969422 - 1969493
Alignment:
Q  26 aaagatgatggatcttttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaac 97  Q
    ||||| ||||| |||| |||||| ||  |||||||| ||||||||||||||||||||||||| ||| |||||    
T  1969422 aaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggagaaatttggtgtaggaaaac 1969493  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 2004219 - 2004148
Alignment:
Q  26 aaagatgatggatcttttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaac 97  Q
    ||||| ||||| |||| |||||| ||  ||||||||||||||||||||||||||||||| || ||| |||||    
T  2004219 aaagaagatggttcttctacaaacactatttctcaattagcactcaagtggagaaatttagtgtaggaaaac 2004148  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 2007599 - 2007528
Alignment:
Q  26 aaagatgatggatcttttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaac 97  Q
    ||||| ||||| |||| |||||| ||  |||||||| ||||||| ||||||||||||||||| |||||||||    
T  2007599 aaagaagatggttcttctacaaaaactatttctcaaatagcacttaagtggagaaatttggtgtagaaaaac 2007528  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 2437216 - 2437292
Alignment:
Q  26 aaagatgatggatcttttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaacaagtt 102  Q
    ||||| ||||| ||||  ||||||||  ||||||||||| |||||||||||||||  |||||  || ||||||||||    
T  2437216 aaagaagatggttcttcgacaaagactatttctcaattaacactcaagtggagaagcttggtgcaggaaaacaagtt 2437292  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 5903014 - 5903047
Alignment:
Q  54 tttctcaattagcactcaagtggagaaatttggt 87  Q
    ||||||||||||||||||||||||||||||||||    
T  5903014 tttctcaattagcactcaagtggagaaatttggt 5903047  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 5906471 - 5906531
Alignment:
Q  27 aagatgatggatcttttacaaagacactttctcaattagcactcaagtggagaaatttggt 87  Q
    |||| ||||| |||| || ||||||  ||||||||||||||| |||||||| |||||||||    
T  5906471 aagaagatgggtcttctagaaagactgtttctcaattagcacacaagtggaaaaatttggt 5906531  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 5890631 - 5890603
Alignment:
Q  54 tttctcaattagcactcaagtggagaaat 82  Q
    |||||||||||||||||||||||||||||    
T  5890631 tttctcaattagcactcaagtggagaaat 5890603  T

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