View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690-Insertion-2 (Length: 482)
Name: NF1690-Insertion-2
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690-Insertion-2 |
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| [»] scaffold0581 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 10 - 460
Target Start/End: Original strand, 25616879 - 25617328
Alignment:
| Q |
10 |
tataatcccaaataagctttaacaatactataactctctatggagtgtttgatcatacttgaatactctattgtagtgtgggtagtaaaatggtttctga |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25616879 |
tataatcccaaataagctttaacaatactataactctctatggagtgtttgatcatacttgaatactctattgtagtgtgggtagtaaaatggtttctga |
25616978 |
T |
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| Q |
110 |
tctataaaatcatcatcattgtcacttttacagtatgatttgtgtccaaaatgaggttgataagatcataacatcttttttgcacctcacacatttgaac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25616979 |
tctataaaatcatcatcattgtcacttttacagtatgatttgtgtccaaaatgaggttgataagatcataacatcttttttgcacctcacacatttgaac |
25617078 |
T |
|
| Q |
210 |
ctagcttaagcatagcaagtgagtcaaatacattgctttcatccgtcttttgcatcgattttgttggnnnnnnnnnngtcttttattttctctttggcct |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25617079 |
ctagcttaagcatagcaagtgagtcaaatacattgcttttatccgttttttgcatcgattttgttggttttttttt--tcttttattttctctttggcct |
25617176 |
T |
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| Q |
310 |
cagtttggacaacttacacaaaccttagcagtttaagagtatattcatataaatctcttggtggacac-aaaacatactgaaagagtgacaaaaatggtg |
408 |
Q |
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| T |
25617177 |
cagtttggacaacttacacaaaccttagcagtttaagagtatattcatataaatctcttggtggacacaaaaacatactgaaagagtgacaaaaatggtg |
25617276 |
T |
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| Q |
409 |
attttatagattggaaatattattagtatccatactacaacagagtattcaa |
460 |
Q |
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| T |
25617277 |
attatatagattggaaatattagtagtatccatattgtaacatagtattcaa |
25617328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 482
Target Start/End: Complemental strand, 25617026 - 25616915
Alignment:
| Q |
371 |
tggacacaaaacatactgaaagagtgacaaaaatggtgattttatagattggaaatattattagtatccatactacaacagagtattcaagtatgatcaa |
470 |
Q |
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|||||||||| ||||||| || |||||||| ||| ||||||||||||| |||| | ||| || ||| ||||||| ||||||||||||||||||||| |
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| T |
25617026 |
tggacacaaatcatactgtaaaagtgacaatgatgatgattttatagatcagaaaccattttactacccacactacaatagagtattcaagtatgatcaa |
25616927 |
T |
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| Q |
471 |
acactgcataga |
482 |
Q |
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||||| |||||| |
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| T |
25616926 |
acactccataga |
25616915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 13299015 - 13299090
Alignment:
| Q |
101 |
ggtttctgatctataaaatcatcatcattgtcacttttacagtatgatttgtgtccaaaatgaggttgataagatc |
176 |
Q |
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| T |
13299015 |
ggtttctgatctttaaaatcaccatcgctgtcacttttgcagtatgctttgtgcccacaaagagcttgataagatc |
13299090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 13261127 - 13261254
Alignment:
| Q |
88 |
tgggtagtaaaatggtttctgatctataaaatcatcatcattgtcacttttacagtatgatttgtgtccaaaatgaggttgataagatcataacatcttt |
187 |
Q |
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|||| ||| ||| |||||||||||||| |||||| |||||||||| ||||| |||||| | |||| ||| | ||| ||||||||||| ||||| ||| |
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| T |
13261127 |
tgggcagtgaaaaggtttctgatctattaaatcaccatcattgtctcttttgcagtatactctgtgcccaccaagagcttgataagatcggaacat-ttt |
13261225 |
T |
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| Q |
188 |
tttgcacctcacacatttgaacctagctt |
216 |
Q |
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| T |
13261226 |
tccgcacctctcacagttgaacctggctt |
13261254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 10 - 460
Target Start/End: Complemental strand, 6036 - 5582
Alignment:
| Q |
10 |
tataatcccaaataagctttaacaatactataactctctatggagtgtttgatcatacttgaatactctattgtagtgtgggtagtaaaatggtttctga |
109 |
Q |
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| T |
6036 |
tataatcccaaataagctttaacaatactataactctctatggagtgtttgatcatacttgaatactctattgtagtgtgggtagtaaaatggtttctga |
5937 |
T |
|
| Q |
110 |
tctataaaatcatcatcattgtcacttttacagtatgatttgtgtccaaaatgaggttgataagatcataacatcttttttgcacctcacacatttgaac |
209 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5936 |
tctataaaatcatcattattgtcacttttacagtatgatttgtgtccaaaatgaggttgataagatcataacatcttttttgcacctcacacatttgaac |
5837 |
T |
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| Q |
210 |
ctagcttaagcatagcaagtgagtcaaatacattgctttcatccgtcttttgcatcgattttgttgg----nnnnnnnnnngtcttttattttctctttg |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| |||||||||||||||||| |
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| T |
5836 |
ctagcttaagcatagcaagtgagtcaaatacattgcttttatctgttttttgcatcgattttgttggttttttttttctttctcttttattttctctttg |
5737 |
T |
|
| Q |
306 |
gcctcagtttggacaacttacacaaaccttagcagtttaagagtatattcatataaatctcttggtggacacaaaacatactgaaagagtgacaaaaatg |
405 |
Q |
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| T |
5736 |
gcctcagtttggacaacttacacaaaccttagcagtttaagagtatattcatataaatctcttggtggacacaaaacatactgaaagagtgacaaaaatg |
5637 |
T |
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| Q |
406 |
gtgattttatagattggaaatattattagtatccatactacaacagagtattcaa |
460 |
Q |
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||||| ||||||||||||||||||| ||||||||||| | |||| ||||||||| |
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| T |
5636 |
gtgatcttatagattggaaatattagtagtatccatattgtaacatagtattcaa |
5582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 371 - 482
Target Start/End: Original strand, 5889 - 6000
Alignment:
| Q |
371 |
tggacacaaaacatactgaaagagtgacaaaaatggtgattttatagattggaaatattattagtatccatactacaacagagtattcaagtatgatcaa |
470 |
Q |
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| T |
5889 |
tggacacaaatcatactgtaaaagtgacaataatgatgattttatagatcagaaaccattttactacccacactacaatagagtattcaagtatgatcaa |
5988 |
T |
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| Q |
471 |
acactgcataga |
482 |
Q |
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||||| |||||| |
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| T |
5989 |
acactccataga |
6000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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