View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690-Insertion-3 (Length: 373)
Name: NF1690-Insertion-3
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 53678236 - 53678039
Alignment:
| Q |
8 |
gaattatgaaactaatgtcgttatagcttaaacttcataaagttttgtcaaatcaataaaattaataacaacttcgttgcaaatattgaagtgtcccttc |
107 |
Q |
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| T |
53678236 |
gaattatgaaacttatgtcgttatagcttaaacttcataaagttttgtcaaatcaataaaattaataacaacttcgttgcaaatattgaagtgtcccttc |
53678137 |
T |
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| Q |
108 |
aatactgctcatatggatgaatgggtgtaaacatattatttattg-attcattta-tttttgtgtcagattatttattgactcataaatgttacttct |
203 |
Q |
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| T |
53678136 |
aatactgctcatatggatggatgggtgtaaacatattatttattgaattcatttattttttttgtcaaattatttattgactcataaatgttacttct |
53678039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 208 - 373
Target Start/End: Complemental strand, 53678007 - 53677842
Alignment:
| Q |
208 |
ttggtagcagcaacccctactatatcatttcatggctgcacatgtgcatgnnnnnnnatatactctgaattgaaaaatcagcataataatttaacaaatc |
307 |
Q |
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| T |
53678007 |
ttggtagcagcaacccctactatctcatttcatggcagcacatgttcatgtttttttatatactctgaattgaaaaatcagcataataatttaacaaatc |
53677908 |
T |
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| Q |
308 |
tttaagtgaaagttgcacatgctcataaggcaattcttattctggaagctataaatggattttgaa |
373 |
Q |
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| T |
53677907 |
tttaagtgaaagttgcacatgctcataaggcaattcttattctggaagctataaatggattttgaa |
53677842 |
T |
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