View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690-Insertion-5 (Length: 791)
Name: NF1690-Insertion-5
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690-Insertion-5 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 639; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 8 - 791
Target Start/End: Original strand, 42207289 - 42208097
Alignment:
| Q |
8 |
gattctgggcagagaaaatgtatcccttggtttggtgatgcataaactaacatgtgtgacatctgttcaacttctaaaagagactgcattttagatcctt |
107 |
Q |
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| T |
42207289 |
gattctgggcagagaatatgtatcccttggtttggtgatggataaactaacatgtgtgacatctgttcaacttctaaaagagactgcattttagatcctt |
42207388 |
T |
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| Q |
108 |
ctgttattgaggtttcattattttttcttcaagaaaagaacaaaactatacgaatgttg----------------------ggtccctcagtcatctttt |
185 |
Q |
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| T |
42207389 |
ctgttattgaggtttcattattttttctacaagaaaagaacaaaactatacgaatgttgatcgaaacttttacgaatgttgggtccctcagtcatctttt |
42207488 |
T |
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| Q |
186 |
tcgtttgctacggtaatttttgaattttaattccaacatattttcattcatacatgttgggatatgcccatatttctcattcttgatttttcaacaaaac |
285 |
Q |
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| T |
42207489 |
tcgtttgctacggtaatttttgaattttaattccaacatatttgcattcatacatgttgggatatgcccatatt-ctcattcttgatttttcaacaaaat |
42207587 |
T |
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| Q |
286 |
tcaatcttctgatttgagaaaagaaccgtgc-----cccacgactctattttatgctaatgttttgaaatataaacttttttgttcgctacggtaatttt |
380 |
Q |
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| T |
42207588 |
tcaatcttcagatttgagaaaagaaccgtgcacagtcccacgactctattttatgctaatgttttgaaatataaacttttttgttcgctacggtaatttt |
42207687 |
T |
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| Q |
381 |
ggaattttgattccaccgtatttaagttgatgaatgctctttttcattcttgaatcttgattattcaagaacattcaatcttctgcttgaaagaaagaaa |
480 |
Q |
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| T |
42207688 |
ggaattttgattccaccgtatttaagttgatgaatgctctttttcattcttgaatcttgattattcaagaacattcaatcttctgcttgaaagaaagaaa |
42207787 |
T |
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| Q |
481 |
acatgagaaacttactctctgccaagaccctgtttggcatgnnnnnnnttgaaagatattttacatttgttagttgttaccataatggagtttcccacgt |
580 |
Q |
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| T |
42207788 |
acgtgagaaacttactctctgccaagaccctgtttggcataaaaaaaattgaaagatattttacatttgttagttgttaccataatggagtttcccacgt |
42207887 |
T |
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| Q |
581 |
tgtttccactaatggtttataattgatgcctattgggaacgatgttgggttacctattttcgtgttcttggttattcaagaacattcaatcttctgcttc |
680 |
Q |
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| T |
42207888 |
tgtttccactaacggtttataattgatgcctattgggaatgatgttgggttacctattttcgtgttcttggttattcaagaacattcaatcttctgcttc |
42207987 |
T |
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| Q |
681 |
aaataaaagtgaaccttcaattttgtaagttaaaattttacagggtaataataaaccctacaagactgtgaatcagtgcgggatggagtcttatttcata |
780 |
Q |
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| T |
42207988 |
aaataaaagtgaaccttcaattttgtaagttaaaattttacagggtaatgataaaccctacaagactgtgaatcagtgcgggatggagtcttatttcat- |
42208086 |
T |
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| Q |
781 |
aattgataagg |
791 |
Q |
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| T |
42208087 |
aattgataagg |
42208097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 42208845 - 42208886
Alignment:
| Q |
28 |
tatcccttggtttggtgatgcataaactaacatgtgtgacat |
69 |
Q |
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| T |
42208845 |
tatcccttggtttggtgatggataaactagcatgtgtgacat |
42208886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 42206525 - 42206601
Alignment:
| Q |
117 |
aggtttcattattttttcttcaagaaaagaacaaaactat-acgaatgttgggtccctcagtcatctttttcgtttg |
192 |
Q |
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| T |
42206525 |
aggtttcattattttttctttaagaaagaaaccatacgattacgaatgtttggtccctcgatcatctttttcgtttg |
42206601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 6918293 - 6918331
Alignment:
| Q |
34 |
ttggtttggtgatgcataaactaacatgtgtgacatctg |
72 |
Q |
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| T |
6918293 |
ttggtttggtgatggataaactagcatgtgtgacatctg |
6918331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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