View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690-Insertion-6 (Length: 599)
Name: NF1690-Insertion-6
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 283 - 599
Target Start/End: Complemental strand, 8351416 - 8351099
Alignment:
| Q |
283 |
tgtgtcaactttggtggcaacatttgttttcaaaatatagtagtactcacttnnnnnnnnnnnnnnnntggtgttaaactactaggaaagttttcatcat |
382 |
Q |
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| T |
8351416 |
tgtgtcaactttggtggcaacatttgttttcaaaatatagtagtactcactaaaaaataaataaaaaatggtgttaaactactaggaaagttttcatcat |
8351317 |
T |
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| Q |
383 |
aaaaaagctaataggaaagaacatcgcaacatcgtacagtctataaagaacgaatatttaaggttgaaaggtatttcacgaggaacgtgaaagaagaaat |
482 |
Q |
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| T |
8351316 |
aaaaaagctaataggaaagaacatcgcaacatcgtacagtctataaagaacgaatatttaaggttgaaaggtatttcacgaggaacgtgaaagaagaaat |
8351217 |
T |
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| Q |
483 |
tgatttctctcat---ataagtcacaagtctttattgataagtccatattttgagtagctacttatgtgaacgcagttaacaattcattttggagcatat |
579 |
Q |
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| T |
8351216 |
tgatttctctcatataataagtcacaagtctttattgatcagtccatattttgagtagctacttatgtgaacgcagttaacaattcattttggagc--at |
8351119 |
T |
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| Q |
580 |
atgccacatgacatgaccca |
599 |
Q |
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| T |
8351118 |
atgccacatgacatgaccca |
8351099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 8351688 - 8351489
Alignment:
| Q |
8 |
ttgcaatgttggttgttgtatgtgggatcccacagattacattaaaaatttgatcacttaactgtatagttgaatggagaggagattacccacacaattt |
107 |
Q |
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| T |
8351688 |
ttgcaatgttggttgttgtatgtgggatcccacagattacattaaaaatttgatcacttaa-----tagttgaatggagaggagactacccacacaattt |
8351594 |
T |
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| Q |
108 |
taaaacaaatgtgttattcgaacacgagaaagacaacatcatcatatattatatgtcgacatcatataaaatacactaatcatatgtatgtgtgcatttt |
207 |
Q |
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| T |
8351593 |
taaaacaaatgtgttattcgaacacaagaaagacaacatcatcatatatcatatgttgatatcatataaaatacactaatcatatgtatgtgtgcatttt |
8351494 |
T |
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