View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690-Insertion-9 (Length: 694)
Name: NF1690-Insertion-9
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690-Insertion-9 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 429 - 694
Target Start/End: Complemental strand, 6972734 - 6972469
Alignment:
| Q |
429 |
ccatatatttgatgacgaagtttggttaattattaagtcttcgactttatagggaccattgtaccattgtattaccaccaaatagacaatggtttagtga |
528 |
Q |
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| T |
6972734 |
ccatatatttaatgacgaagttttgttaattattaagtcttcgactttatagggaccattgtacctttgtattaccaccaaatagacaatggtttagtga |
6972635 |
T |
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| Q |
529 |
gtactggttgtatataaattcaatagtccaacaacttgtccaattatcactcaatgaaccacatccttacattattttgtaaatttgaatatcaaattac |
628 |
Q |
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| T |
6972634 |
gtactggttgtatataaattcaatagtccaacaacttgtccaattatcactcaatgaaccacatccttaaattattttgtaaatttgaatatcaaattac |
6972535 |
T |
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| Q |
629 |
tttatccatacaattgtgttttttgttttgcatattaactaatatactgtggttgacttattaagg |
694 |
Q |
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| T |
6972534 |
tttatccatacaattgtgttttttgttttgcatattaactaatatactgtggttgactcattaagg |
6972469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 103 - 273
Target Start/End: Complemental strand, 6973061 - 6972891
Alignment:
| Q |
103 |
tttgggaaataataatcaatattgagtttatcattaagcaaatcaaaatctaatgtggtggtgtgcctcaaagcgaaggtgaaggaattagaatatgact |
202 |
Q |
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| T |
6973061 |
tttgggcaataataatcaatattgagtttatcattaagcaaatcaaaatctaatgtggtggtgtggctcaaagtgaaggtgaaggaattagaatatgact |
6972962 |
T |
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| Q |
203 |
tcattcattggtgggacaaatccacttcattgcctttgctacttggatcttcttcataagattttgtgaac |
273 |
Q |
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| T |
6972961 |
tcgttcattggtgggacaaatccacttcattgcctttgctacttggatcttcttcataagattttgtgaac |
6972891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 6973338 - 6973238
Alignment:
| Q |
8 |
gtatacatgtcatcaatgtgaagtcaaaagattgttttcttgtcatttggttagctagcatttggatgatttgaaaacttaataaatagtaaccttttgg |
107 |
Q |
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| T |
6973338 |
gtatacatgtcctcaatgtgaagtcaaaagattgctttcttgtcatttggttagctagcatttggatgatttgaaaacttaataaatagtaaccttttgg |
6973239 |
T |
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| Q |
108 |
g |
108 |
Q |
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| T |
6973238 |
g |
6973238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 6972849 - 6972801
Alignment:
| Q |
314 |
tttcatgttgaaccaaatgcatgcgcaaaggaacgaaacaataaaaggt |
362 |
Q |
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| T |
6972849 |
tttcatgttgaaccaaatgcatgcgcaaaggaacgaaacaataaaaggt |
6972801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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