View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16901_low_1 (Length: 243)
Name: NF16901_low_1
Description: NF16901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16901_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 8756926 - 8757044
Alignment:
| Q |
14 |
agggttcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatcccctaagcc |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8756926 |
agggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatcccctaagcc |
8757025 |
T |
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| Q |
114 |
caacgtgggtccgccactg |
132 |
Q |
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||||||||||||||||||| |
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| T |
8757026 |
caacgtgggtccgccactg |
8757044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 27984584 - 27984700
Alignment:
| Q |
16 |
ggttcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatcccctaagccca |
115 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27984584 |
ggttcatagttaaattttcaggggattcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatcccctaagccca |
27984683 |
T |
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| Q |
116 |
acgtgggtccgccactg |
132 |
Q |
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| T |
27984684 |
acatgggtccgccactg |
27984700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 32568949 - 32568834
Alignment:
| Q |
14 |
agggttcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatcccctaagcc |
113 |
Q |
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| T |
32568949 |
agggttcatagttaaattttcagggggttcattcaacacaaagatagaaaattaggtgcaaatataaaatttga--ggatgcagctgcatcccct-ggcc |
32568853 |
T |
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| Q |
114 |
caacgtgggtccgccactg |
132 |
Q |
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| T |
32568852 |
caacgtgggtccgccactg |
32568834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 40864801 - 40864919
Alignment:
| Q |
14 |
agggttcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatcccctaagcc |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40864801 |
agggctcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatcccctaagcc |
40864900 |
T |
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| Q |
114 |
caacgtgggtccgccactg |
132 |
Q |
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||||||||||||||||||| |
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| T |
40864901 |
caacgtgggtccgccactg |
40864919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 20030469 - 20030587
Alignment:
| Q |
14 |
agggttcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatcccctaagcc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20030469 |
agggttcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatcccctgagcc |
20030568 |
T |
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| Q |
114 |
caacgtgggtccgccactg |
132 |
Q |
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||||||||||||||||||| |
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| T |
20030569 |
caacgtgggtccgccactg |
20030587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 545119 - 545024
Alignment:
| Q |
132 |
gagtgagactaatgtcaagtagacagctcagttggttccaagtagacaactcagagttaacggacaatctgtgatgcgctgcagccaactgtgttg |
227 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
545119 |
gagtgcgactaatgtcaagtagacagctcagttggttccaagtagacaactcagagttaacggacaatctgtgatgcactgcagccaactgtgttg |
545024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 40608539 - 40608567
Alignment:
| Q |
80 |
aaatttgaggggatgcagctgcatcccct |
108 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
40608539 |
aaatttgaggggatgcagctgcatcccct |
40608567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 5375477 - 5375386
Alignment:
| Q |
15 |
gggttcatagttaaattttcagggggttcattcaacaaaaagttagaaaattaggtgcaactataaaatttgaggggatgcagctgcatccc |
106 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||| |
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| T |
5375477 |
gggttcatagttaaattttcagagggttcattcaagaaaaagttaaaaaattaggtccaaatatgaaatttgaggggatgcagctgcatccc |
5375386 |
T |
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