View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16902_high_1 (Length: 561)
Name: NF16902_high_1
Description: NF16902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16902_high_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 22 - 561
Target Start/End: Original strand, 51008384 - 51008923
Alignment:
| Q |
22 |
attcaccctctacacttcacctaccatagtaacagcctccaatatatatgcatataaacaagataatattcttgtgataattagttgcatcatgcttata |
121 |
Q |
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| T |
51008384 |
attcaccctctacacttcacctaccatagtaacagcctccaatatatatgcatataaacaagataatattcttgtgataattagttgcatcatgcttata |
51008483 |
T |
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| Q |
122 |
agacattcattggtataagcaactttgtttctacttgacttgcttagataatatttttgg----tataagctgttttatgtatgcatatgatctaaatat |
217 |
Q |
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| T |
51008484 |
agacattcattggtataagcaaatttgtttctacttgatttgcttagataatatttttggtatatataagctgttttatgtatgcatatgatctaaatat |
51008583 |
T |
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| Q |
218 |
tttgatgatgatgattcagttaactattgctgttatttaagcttattgtacgaatataaagaataaattctactgannnnnnnggatgtatgcatgtgag |
317 |
Q |
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| T |
51008584 |
tttgatgatgatgattcagttaactattgctgtcatttaagcttattgtatgaatataaagaataaattctactgatttttttgcatgtatgcatgtgag |
51008683 |
T |
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| Q |
318 |
tatttaaaaaatgcatattctaattgtacattatgtcattaattatctgatatattccttacaaacaaatcatatatataagacatgacaaaattatcac |
417 |
Q |
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| T |
51008684 |
tatttaaaaaatgaatattctaattgtacattatgtc----attatctgatatattccttacaaacaaatcatatatataagacatgacaaaattatcac |
51008779 |
T |
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| Q |
418 |
atgatgtatgattctgatatctgacaaattttattatggtacattttgtttgtttgctagctagctagctaggtagtaaaagttccagcatctattggat |
517 |
Q |
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| T |
51008780 |
atgatgtatgattctgatatctgacaaattttattatggtacattttgtgtgtttgctagctagctagctaggtagtaaaagtttcagcatctattggat |
51008879 |
T |
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| Q |
518 |
tcttattaattattaagagtgtgacatgaacaatttcatcatgc |
561 |
Q |
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| T |
51008880 |
tcttattaattattaagagtgtgacatgaacaatttcatcatgc |
51008923 |
T |
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