View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16902_high_10 (Length: 313)
Name: NF16902_high_10
Description: NF16902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16902_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 45466719 - 45466436
Alignment:
| Q |
19 |
atccggaacactgggttcagccacataaacctgttgaaaccttctttcaaatgctgcatctttttcaacatacttcctatactcctcaagtgttgtagca |
118 |
Q |
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| T |
45466719 |
atccggaacactaggttcagccacataaacctgttgaaaccttctttcaaatgctgcatctttttcaacatacttcctatactcctcaagtgttgtagca |
45466620 |
T |
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| Q |
119 |
ccaatacatcgaagctgtccacgagcaagcattggcttaaaaagattagcagcatccattgatccttctgttctaccagctccaagaacaagatgaatct |
218 |
Q |
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| T |
45466619 |
ccaatacatcgaagctgtccacgagcaagcattggcttaaaaagattagcagcatccattgatccttctgttctaccagctccaagaacaagatgaatct |
45466520 |
T |
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| Q |
219 |
catcaataaaaagaataaccttcccttcagcttcttcaacttctttcaaaacagccttcaacctctcttcaaattctcccctat |
302 |
Q |
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| T |
45466519 |
catcaatgaaaagaataaccttcccttcagcttcttcaacttctttcaaaacagccttcaacctctcttcaaattctcccctat |
45466436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 26 - 302
Target Start/End: Complemental strand, 10044600 - 10044324
Alignment:
| Q |
26 |
acactgggttcagccacataaacctgttgaaaccttctttcaaatgctgcatctttttcaacatacttcctatactcctcaagtgttgtagcaccaatac |
125 |
Q |
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| T |
10044600 |
acactaggttcagaaacatgaacctgttgaaacctcctttcaaatgctgcatccttttcaacatattttctatattcatcaagtgttgttgcaccgatgc |
10044501 |
T |
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| Q |
126 |
atcgaagctgtccacgagcaagcattggcttaaaaagattagcagcatccattgatccttctgttctaccagctccaagaacaagatgaatctcatcaat |
225 |
Q |
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| T |
10044500 |
atctaagttggccacgagcaagcataggtttcaaaagattagcagcatccattgatccttgacattgaccggcaccgagaacaagatgaatttcatcaat |
10044401 |
T |
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| Q |
226 |
aaaaagaataaccttcccttcagcttcttcaacttctttcaaaacagccttcaacctctcttcaaattctcccctat |
302 |
Q |
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|||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||| | |||||||| |||||||| |
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| T |
10044400 |
gaaaacaataaccttcccttcagcatcttccacttctttcaaaactgccttcaacctttgttcaaattgtcccctat |
10044324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 3516492 - 3516581
Alignment:
| Q |
88 |
atacttcctatactcctcaagtgttgtagcaccaatacatcgaagctgtccacgagcaagcattggcttaaaaagattagcagcatccat |
177 |
Q |
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| T |
3516492 |
atacttccgatactcatcaagtgttgttgcaccaatgcatcgcagctctcctctgccgagcataggctttaagagattaccagcatccat |
3516581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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