View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16902_high_12 (Length: 307)
Name: NF16902_high_12
Description: NF16902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16902_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 30437778 - 30438067
Alignment:
| Q |
1 |
agtcacaactctttgttatcaatatctaatatctatgataaaatctatgtattatttgtttgcaatgaaattagtatttgcaggctgccaaacaagaaaa |
100 |
Q |
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| T |
30437778 |
agtcacaactctttgttatcaatatctaatatctatgataaaatctatgtattatttgtttgcaatgaaattagtatttgcaggctgccaaacaagaaaa |
30437877 |
T |
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| Q |
101 |
ggaatcgaaacaacaaagctaaacaaacttcacagctactttgaattcagataacataattcttcctctgagctcatgctcttagttggtataacaatga |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30437878 |
ggaatcgaaacaacaaagctaaacaaacttaacagctactttgaattcagataacaaaattcttcctctgagctcgtgctcttagttggtataacaatga |
30437977 |
T |
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| Q |
201 |
ccaacaaaaaattaggtaaaacctacatcccacgacggatatagtttatgcctcctcgggaaagagagctttaccacaacaagttccacc |
290 |
Q |
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| T |
30437978 |
ccaacaaaaaattaggtaaaacctacatcccacgacggatatagtttacgcctcctcgggaaagagaactttaccacaacaagttccacc |
30438067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 18472065 - 18471993
Alignment:
| Q |
28 |
aatatctatgataaaatctatgtattatttgtttgcaatgaaattagtatttgcaggctgccaaacaagaaaa |
100 |
Q |
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|||||| |||| ||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18472065 |
aatatccatgacaaaatctttatattatttgtttgcaatgcaattagtatttgcaggctgccaaacaagaaaa |
18471993 |
T |
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