View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16902_high_19 (Length: 207)

Name: NF16902_high_19
Description: NF16902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16902_high_19
NF16902_high_19
[»] chr5 (9 HSPs)
chr5 (17-191)||(29223334-29223509)
chr5 (11-52)||(4391994-4392035)
chr5 (11-52)||(8692517-8692558)
chr5 (11-52)||(32891183-32891224)
chr5 (11-52)||(228032-228073)
chr5 (11-52)||(11739368-11739409)
chr5 (11-52)||(37094060-37094101)
chr5 (11-53)||(5481366-5481408)
chr5 (24-52)||(42148878-42148906)
[»] chr4 (7 HSPs)
chr4 (11-53)||(24683084-24683126)
chr4 (11-52)||(18375539-18375580)
chr4 (13-52)||(4098532-4098571)
chr4 (11-52)||(26179359-26179400)
chr4 (11-52)||(41633226-41633267)
chr4 (11-52)||(47281685-47281726)
chr4 (15-47)||(37674153-37674185)
[»] chr3 (13 HSPs)
chr3 (11-53)||(39145259-39145301)
chr3 (11-53)||(50613023-50613065)
chr3 (11-52)||(1561404-1561445)
chr3 (11-52)||(31788314-31788355)
chr3 (11-50)||(23643128-23643167)
chr3 (11-53)||(544642-544684)
chr3 (11-52)||(38176538-38176579)
chr3 (11-52)||(45166235-45166276)
chr3 (11-53)||(521913-521955)
chr3 (11-53)||(34624625-34624666)
chr3 (11-53)||(36517522-36517564)
chr3 (11-52)||(52546751-52546792)
chr3 (11-51)||(20912177-20912217)
[»] chr2 (10 HSPs)
chr2 (11-53)||(28429289-28429331)
chr2 (11-52)||(41465048-41465089)
chr2 (11-52)||(42263840-42263881)
chr2 (11-53)||(13686001-13686043)
chr2 (11-53)||(16058522-16058564)
chr2 (11-53)||(45093294-45093336)
chr2 (11-52)||(28716488-28716529)
chr2 (11-53)||(23454410-23454452)
chr2 (11-52)||(29689366-29689407)
chr2 (11-52)||(35676426-35676467)
[»] chr1 (10 HSPs)
chr1 (11-53)||(1270179-1270221)
chr1 (11-53)||(4194774-4194816)
chr1 (11-53)||(20808955-20808997)
chr1 (11-53)||(34475907-34475949)
chr1 (11-52)||(29095671-29095712)
chr1 (11-52)||(9098715-9098756)
chr1 (11-52)||(31032846-31032887)
chr1 (11-52)||(42480130-42480171)
chr1 (11-51)||(24135765-24135805)
chr1 (11-52)||(34807945-34807986)
[»] scaffold0002 (1 HSPs)
scaffold0002 (11-52)||(492675-492716)
[»] chr7 (5 HSPs)
chr7 (11-53)||(17611850-17611892)
chr7 (14-53)||(22326866-22326905)
chr7 (11-53)||(19479449-19479491)
chr7 (11-53)||(27425902-27425944)
chr7 (11-52)||(23992099-23992140)
[»] chr8 (7 HSPs)
chr8 (11-51)||(39112658-39112698)
chr8 (15-53)||(1196515-1196553)
chr8 (11-53)||(4851741-4851783)
chr8 (11-53)||(34392116-34392158)
chr8 (11-53)||(41322537-41322579)
chr8 (11-52)||(1005598-1005639)
chr8 (11-52)||(29314008-29314049)
[»] scaffold0132 (2 HSPs)
scaffold0132 (11-53)||(544-586)
scaffold0132 (11-53)||(8504-8546)
[»] chr6 (2 HSPs)
chr6 (11-53)||(7646923-7646965)
chr6 (11-52)||(25935517-25935558)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 9e-69; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 29223509 - 29223334
Alignment:
Q  17 ttgaagaattcttgatattatttttctagagatatagtgctgctgttagtatttaggtgcatagtaactaaacatcacaaaatcaactagttaatgagat 116  Q
    |||||||||||||||||||||||||||| ||||||||  ||||| |||||||||||||||||||||||| ||||||||||||||| || |||||||||||    
T  29223509 ttgaagaattcttgatattatttttctaaagatatagcactgctcttagtatttaggtgcatagtaactcaacatcacaaaatcagctggttaatgagat 29223410  T
Q  117 ttctgcttttataactactattgaagccagtggcggagccactcat-ggccacggcccacccaaaccctaaaaaat 191  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||    
T  29223409 ttctgcttttataactactattgaagctagtggcggagccactcatgggccacggcccgcccaaaccctaaaaaat 29223334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 4391994 - 4392035
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  4391994 ttattcttgaagaattcttgatgttatttttctagagatata 4392035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 8692558 - 8692517
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  8692558 ttattcttgaagaattcttgatgttatttttctagagatata 8692517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 32891224 - 32891183
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  32891224 ttattcttgaagaattcttgatgttatttttctagagatata 32891183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 228073 - 228032
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    ||||||||||| |||||||||| |||||||||||||||||||    
T  228073 ttattcttgaaaaattcttgatgttatttttctagagatata 228032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 11739368 - 11739409
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  11739368 ttattcttgaagaattcttgatgttatttttctaaagatata 11739409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 37094060 - 37094101
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||| ||||| |||||||||||||||||||    
T  37094060 ttattcttgaagaattgttgatgttatttttctagagatata 37094101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 5481408 - 5481366
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||| ||||||| |||||||||||||||||| |||||||    
T  5481408 ttattcttaaagaatttttgatattatttttctagtgatatag 5481366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 42148906 - 42148878
Alignment:
Q  24 attcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||||||||||||    
T  42148906 attcttgatattatttttctagagatata 42148878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 24683126 - 24683084
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  24683126 ttattcttgaagaattcttgatgttatttttctagagatatag 24683084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 18375539 - 18375580
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  18375539 ttattcttgaagaattcttgatgttatttttctagagatata 18375580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 4098532 - 4098571
Alignment:
Q  13 attcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  4098532 attcttgaagaattcttgatgttatttttctagagatata 4098571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 26179359 - 26179400
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  26179359 ttattcttgaagaattcttaatgttatttttctagagatata 26179400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 41633267 - 41633226
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  41633267 ttattcttgaagaattcttaatgttatttttctagagatata 41633226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 47281685 - 47281726
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||||| ||||||||||||| |||||    
T  47281685 ttattcttgaagaattcttgatgttatttttctagacatata 47281726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 37674153 - 37674185
Alignment:
Q  15 tcttgaagaattcttgatattatttttctagag 47  Q
    |||||||||||||||||| ||||||||||||||    
T  37674153 tcttgaagaattcttgatgttatttttctagag 37674185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 39145301 - 39145259
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  39145301 ttattcttaaagaattcttgatattatttttctagagatatag 39145259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 50613023 - 50613065
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  50613023 ttattcttgaagaattcttgatgttatttttctagagatatag 50613065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 1561404 - 1561445
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  1561404 ttattcttgaagaattcttgatgttatttttctagagatata 1561445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 31788355 - 31788314
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  31788355 ttattcttgaagaattcttgatgttatttttctagagatata 31788314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 23643128 - 23643167
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagata 50  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  23643128 ttattcttgaagaattcttgatgttatttttctagagata 23643167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 544684 - 544642
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  544684 ttattcttgaagaattcttggtgttatttttctagagatatag 544642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 38176538 - 38176579
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  38176538 ttattcttgaagaattcttgatgatatttttctagagatata 38176579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 45166276 - 45166235
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    ||||| |||||||||||||||| |||||||||||||||||||    
T  45166276 ttattattgaagaattcttgatgttatttttctagagatata 45166235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 521913 - 521955
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||||||||||||||||| |||||| |||||| ||||||    
T  521913 ttattcttgaagaattcttgatgttatttatctagatatatag 521955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 34624625 - 34624666
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  34624625 ttattcttgaagaattctt-atgttatttttctagagatatag 34624666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 36517564 - 36517522
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||||||||||||||||| |||||| |||||| ||||||    
T  36517564 ttattcttgaagaattcttgatgttatttgtctagatatatag 36517522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 52546792 - 52546751
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||| ||||| ||||||||||| |||||||    
T  52546792 ttattcttgaagaatttttgatgttatttttctaaagatata 52546751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 20912217 - 20912177
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatat 51  Q
    |||||||||||||||||||||| |||||||| || ||||||    
T  20912217 ttattcttgaagaattcttgatgttatttttttaaagatat 20912177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 28429331 - 28429289
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  28429331 ttattcttgaagaattcttgatattatttttctaaagatatag 28429289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 41465048 - 41465089
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  41465048 ttattcttgaagaattcttgatgttatttttctagagatata 41465089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 42263881 - 42263840
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  42263881 ttattcttgaagaattcttgatgttatttttctagagatata 42263840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 13686043 - 13686001
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  13686043 ttattcttgaaaaattcttgatgttatttttctagagatatag 13686001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 16058522 - 16058564
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  16058522 ttattcttgaagaattcttaatgttatttttctagagatatag 16058564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 45093294 - 45093336
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||||||||||| ||||| ||||||||||||||||||||    
T  45093294 ttattcttgaagaattattgatgttatttttctagagatatag 45093336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 28716488 - 28716529
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  28716488 ttattcttgaagaattcttgatgtcatttttctagagatata 28716529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 23454410 - 23454452
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||||||||||| || || ||||||||||||||||||||    
T  23454410 ttattcttgaagaattttttatgttatttttctagagatatag 23454452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 29689366 - 29689407
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||| || |||||||||| |||||||||||||||||||    
T  29689366 ttattcttaaaaaattcttgatgttatttttctagagatata 29689407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 35676426 - 35676467
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||| ||||||||||||| |||||||| ||||||||||    
T  35676426 ttattcttaaagaattcttgatgttatttttttagagatata 35676467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 1270221 - 1270179
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  1270221 ttattcttgaagaattcttgatgttatttttctagagatatag 1270179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 4194816 - 4194774
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  4194816 ttattcttgaagaattcttgatgttatttttctagagatatag 4194774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 20808997 - 20808955
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  20808997 ttattcttgaagaattcttgatgttatttttctagagatatag 20808955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 34475949 - 34475907
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  34475949 ttattcttgaagaattcttgatgttatttttctagagatatag 34475907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 29095671 - 29095712
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  29095671 ttattcttgaagaattcttgatgttatttttctagagatata 29095712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 9098715 - 9098756
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||| ||||||||||||| |||||||||||||||||||    
T  9098715 ttattcttaaagaattcttgatgttatttttctagagatata 9098756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 31032846 - 31032887
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  31032846 ttattcttgaagaattcttgatgatatttttctagagatata 31032887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 42480171 - 42480130
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  42480171 ttattcttgaagaattcttgatgttatttttgtagagatata 42480130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 24135805 - 24135765
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatat 51  Q
    |||||||||||||||||||||| |||||||||| |||||||    
T  24135805 ttattcttgaagaattcttgatgttatttttcttgagatat 24135765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 34807986 - 34807945
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    ||||| |||||||||||||||| ||||||||| |||||||||    
T  34807986 ttatttttgaagaattcttgatgttatttttcgagagatata 34807945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 492716 - 492675
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  492716 ttattcttgaagaattcttgatgttatttttctagagatata 492675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 17611892 - 17611850
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||||||||||||||||| |||||||||||| |||||||    
T  17611892 ttattcttgaagaattcttgatgttatttttctagcgatatag 17611850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 22326905 - 22326866
Alignment:
Q  14 ttcttgaagaattcttgatattatttttctagagatatag 53  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  22326905 ttcttgaagaattcttgatgttatttttctaaagatatag 22326866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 19479491 - 19479449
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||    
T  19479491 ttatttttgaagaatttttgatgttatttttctagagatatag 19479449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 27425902 - 27425944
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||| ||||||||||||| ||||||||||| ||||||||    
T  27425902 ttattctttaagaattcttgatgttatttttctaaagatatag 27425944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 23992099 - 23992140
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||||||||||||||||| |||| ||| ||||||||||    
T  23992099 ttattcttgaagaattcttgatgttatatttgtagagatata 23992140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 39112698 - 39112658
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatat 51  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  39112698 ttatttttgaagaattcttgatgttatttttctagagatat 39112658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 1196553 - 1196515
Alignment:
Q  15 tcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  1196553 tcttaaagaattcttgatgttatttttctagagatatag 1196515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 4851783 - 4851741
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||| || |||||||||| ||||||||||||||||||||    
T  4851783 ttattcttaaaaaattcttgatgttatttttctagagatatag 4851741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 34392158 - 34392116
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    ||||||||||| |||||||||| |||||||| |||||||||||    
T  34392158 ttattcttgaaaaattcttgatgttatttttttagagatatag 34392116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 41322579 - 41322537
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||||||||||||||||| |||||||| || ||||||||    
T  41322579 ttattcttgaagaattcttgatgttatttttttaaagatatag 41322537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 1005639 - 1005598
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||| ||||||| || ||||||||||||||||||||||    
T  1005639 ttattctttaagaatttttaatattatttttctagagatata 1005598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 29314049 - 29314008
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    |||||||| || |||||||||| |||||||||||||||||||    
T  29314049 ttattcttaaacaattcttgatgttatttttctagagatata 29314008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 586 - 544
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||||||||||||||||| |||||||| || ||||||||    
T  586 ttattcttgaagaattcttgatgttatttttttatagatatag 544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 8546 - 8504
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    |||||||||||||||||||||| |||||||| || ||||||||    
T  8546 ttattcttgaagaattcttgatgttatttttttatagatatag 8504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 7646923 - 7646965
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatatag 53  Q
    ||||| || ||||||||||||| ||||||||||||||||||||    
T  7646923 ttatttttaaagaattcttgatgttatttttctagagatatag 7646965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 25935558 - 25935517
Alignment:
Q  11 ttattcttgaagaattcttgatattatttttctagagatata 52  Q
    ||||||||||| ||||||| || |||||||||||||||||||    
T  25935558 ttattcttgaataattcttaatgttatttttctagagatata 25935517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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