View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16902_high_4 (Length: 473)
Name: NF16902_high_4
Description: NF16902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16902_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 44911736 - 44911625
Alignment:
| Q |
14 |
agatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtgatggtgtgaaataattttgataaacatgatgatgcttt |
113 |
Q |
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| T |
44911736 |
agatgaatggcatgaacggtaaattggatgttttatggtagttaaattcctgaccctctgtcatggtgtgaaataattttgataaacatgatgatgcttt |
44911637 |
T |
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| Q |
114 |
gaaagcataggc |
125 |
Q |
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| T |
44911636 |
gaaagcataggc |
44911625 |
T |
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Target: chr2; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 3769095 - 3769176
Alignment:
| Q |
14 |
agatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtgatggtgtgaaataattttga |
95 |
Q |
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| T |
3769095 |
agatgaatggcatgaacggtaaattggaggttctatggtagttaaattcctgaccccctgtgatggtgtgaaataattttga |
3769176 |
T |
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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 352
Target Start/End: Complemental strand, 37844896 - 37844844
Alignment:
| Q |
301 |
cttaagtgcttatagcataaatgcttat-ttagaagtgtttatgtataagtca |
352 |
Q |
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| T |
37844896 |
cttaagtgcttatagcataaaagcttatcatataagtgtttatctataagtca |
37844844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 3928622 - 3928541
Alignment:
| Q |
14 |
agatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtgatggtgtgaaataattttga |
95 |
Q |
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| T |
3928622 |
agatgaatgacatgaacggtaaattgaaggttctatggtagttaaattcctgaccctctgtgatggtgtgaaataattttga |
3928541 |
T |
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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 6353972 - 6353891
Alignment:
| Q |
14 |
agatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtgatggtgtgaaataattttga |
95 |
Q |
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| T |
6353972 |
agatgaatggcatgaacggtaaattggaggttctatggtagtttaattcatgaccctctctgatggtgtgaaataattttga |
6353891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 24936214 - 24936260
Alignment:
| Q |
304 |
aagtgcttatagcataaatgcttatttagaagtgtttatgtataagt |
350 |
Q |
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| T |
24936214 |
aagtgcttatagcataaaggcttatatataagtggttatgtataagt |
24936260 |
T |
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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 30372873 - 30372929
Alignment:
| Q |
14 |
agatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccct |
70 |
Q |
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| T |
30372873 |
agatgaatgacatgaacggtaaattggaggatctatggtagttaaattcctgaccct |
30372929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 1431492 - 1431428
Alignment:
| Q |
287 |
ttttggataaataacttaagtgcttatagcataaatgcttat-ttagaagtgtttatgtataagt |
350 |
Q |
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| T |
1431492 |
ttttggataaacaacttaagttcttatagcataagtgcttatcatataagtgtttatgtataagt |
1431428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 27481481 - 27481415
Alignment:
| Q |
288 |
tttggataaataacttaa----gtgcttatagcataaatgcttatt-tagaagtgtttatgtataag |
349 |
Q |
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| T |
27481481 |
tttggataaacaacttaattaggtgcttatagcataaatgtttattatataagtgtttatgtataag |
27481415 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 32417295 - 32417255
Alignment:
| Q |
303 |
taagtgcttatagcataaatgcttatttagaagtgtttatg |
343 |
Q |
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| T |
32417295 |
taagtgcttatagtataaatgcttatatataagtgtttatg |
32417255 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 36501298 - 36501377
Alignment:
| Q |
15 |
gatgaatggcatgaacggtaaa-ttggaggttttatggtagttaaattcctgaccctctgtgatggtgtgaaataattttg |
94 |
Q |
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| T |
36501298 |
gatgaatggcatgaaggataaagttgga-gttttagggtagttgaatccctggccctttgcgatggtgtgaaatgattttg |
36501377 |
T |
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