View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16902_high_9 (Length: 316)
Name: NF16902_high_9
Description: NF16902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16902_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 136 - 300
Target Start/End: Complemental strand, 34959926 - 34959761
Alignment:
| Q |
136 |
ccaggtaccggtaatgtactaccatcttacattatagtgccagggcagatatga-taccataactgttatttactaagcaaaacctgaagcacactgcac |
234 |
Q |
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| T |
34959926 |
ccaggtactggtaatgtactaccatcttacattatagtgccagggcagatatgaataccataactattatttactaggcaaaacctgaagcacacggcac |
34959827 |
T |
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| Q |
235 |
agccaaataaactcttccacaaaaaccagagcatgtatgatcttttccataaattattgctaatat |
300 |
Q |
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| T |
34959826 |
agccaaataaactcttccacaaaaaccagagcatgtgtgatcttttccataaattattgctaatat |
34959761 |
T |
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Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 104 - 298
Target Start/End: Complemental strand, 34955917 - 34955718
Alignment:
| Q |
104 |
gcgtcatttacttttgcagtcttggatgcaaaccaggtac----cggtaatgtactaccatcttacattatagtgccagggcagatatgataccat-aac |
198 |
Q |
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|||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| | ||| ||||| |||||||| ||||||||||| ||| |
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| T |
34955917 |
gcgtcatttacttttgtagtcttgcctgcgaaccaggtactgataggtaatgtactaccatctcatattgtagtgtcagggcaggtatgataccataaac |
34955818 |
T |
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| Q |
199 |
tgttatttactaagcaaaacctgaagcacactgcacagccaaataaactcttccacaaaaaccagagcatgtatgatcttttccataaattattgctaat |
298 |
Q |
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| T |
34955817 |
tattgtctactaggcaacacctgaagcacactgcacaaccaaataaactcttccacaaaaaccagagcaggtatgatcttttccataaattcttgctaat |
34955718 |
T |
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