View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16902_low_1 (Length: 582)
Name: NF16902_low_1
Description: NF16902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16902_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 174 - 566
Target Start/End: Original strand, 52671461 - 52671849
Alignment:
| Q |
174 |
actacatgaaacaaattgatagtttatgtaaggtcaaaattaagaacttgtctacattatataagaatagaaaacttgtctttacaacccaaataaataa |
273 |
Q |
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| T |
52671461 |
actacatgaaacaaattgatagtttatgtaaggtcaaaattaagaacttgtctacattatataagaatagaaaacttgtctttacaacccaaataaataa |
52671560 |
T |
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| Q |
274 |
agttgttattcattagcgaggaaagaaaatacaataatagcaactccagagcaagaaaagcttcaacaaagcatatgcactgttaccttaaattaaataa |
373 |
Q |
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| T |
52671561 |
agttgttattcattagcgaggaaagaaaatacaataatagtaactccagagcaagaaaagcttcaacaaagcatatgcactgttaccttaaattaaataa |
52671660 |
T |
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| Q |
374 |
aaactttgcaaagtataggtagcctaacgttctaaaaaagttaattaatgcaaagactgatgtaagtctactttggtggtagttcaacaggtgtgagtgt |
473 |
Q |
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| T |
52671661 |
aaactttgcaaagtataggtagcctaacgttctaaaaaagtta---aatgcaaagactgatgtaagtctactttggtggtagttcaacaggtgtgagtgt |
52671757 |
T |
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| Q |
474 |
gtgaacctattgtcacacattttctgcaagctatttggagccttgcgaagttaatctaaaaaatgggaaatcaaagagagaaaaggaattgag |
566 |
Q |
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| T |
52671758 |
gtgaacctattgtcacacattttctgcaagcta-ttggagccttgcgaagttaatctaaaaaatgggaaaccaaagagagaaaaggaattgag |
52671849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 52671236 - 52671384
Alignment:
| Q |
13 |
aatatgatcatcttcataaacgattagatataaaatatatacatttttgcccaccgcatgtctatggtttgtagttaagagtacatttcttcatactctt |
112 |
Q |
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| T |
52671236 |
aatatgatcatcttcataaacgattagatataaaatatatacatttttgcccaccgcatgtctatggtttgtagttaagagtacatttctgcatactctt |
52671335 |
T |
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| Q |
113 |
atatgttgacgtaccgaatgtactcaagccatttccatctctttgtagt |
161 |
Q |
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| T |
52671336 |
atatgttgacgtaccgaatgtactcaagccatttccatctctttgtagt |
52671384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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