View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16902_low_18 (Length: 248)
Name: NF16902_low_18
Description: NF16902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16902_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 37185041 - 37184801
Alignment:
| Q |
1 |
tcttttccaacaagatattaaatgaatataaaaatagtctctcaagaatgaaatcaaaataaaccagatagataaaatccgagcagaacaaaactcaaca |
100 |
Q |
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| T |
37185041 |
tcttttccaacaagatattaaatgaatataaaaatagtctctcaagaatgaaatcaaaataaaccagatagataaaatccgagcagaacaaa-ctcaaca |
37184943 |
T |
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| Q |
101 |
tccctctacatcagcagaatccaattctaactatcaacaattatgaaaaaggaaagtaaactaacttaacatattgtaaaaccattgattctgaatcaaa |
200 |
Q |
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| T |
37184942 |
tccctctacatcagcagaatccaattctaactatcaacagttatgaaaaaggaaagtaaactaacttaacatattgtaaaaccattgattctaaatcaaa |
37184843 |
T |
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| Q |
201 |
aggtttgcacgggccttaaaatgcattttctttatattcttc |
242 |
Q |
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| T |
37184842 |
aggtttgcaagggccttaaaatgcatttgctttattttcttc |
37184801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 37084340 - 37084428
Alignment:
| Q |
90 |
aaaactcaacatccctctacatcagcagaatccaattctaactatcaacaattatgaaaaaggaaagtaaactaactt-aacatattgt |
177 |
Q |
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| T |
37084340 |
aaaagtcaacatccttctacatcaacagaattgaattctaaccatcaaccgtaattaaaaaggaaagtcaaccaacttaaacatattgt |
37084428 |
T |
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