View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16902_low_20 (Length: 222)
Name: NF16902_low_20
Description: NF16902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16902_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 41984517 - 41984731
Alignment:
| Q |
1 |
ataattgggttgattcagaaaatatgaagcagaataccatagaatttattttactacaataggatattcctgtagttgtaaactattaaactgcttaaat |
100 |
Q |
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| T |
41984517 |
ataattgggttgattcagaaaatatgaagcagaataccatagaatttattttactacaataggatattcctgtagttgtaaactattaaactgcttaaat |
41984616 |
T |
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| Q |
101 |
tactttttatacaagatggctttatcagttatcacccttgatcaattgagagaaggaagaaaaagagttgtccaggttctcattcctaactatacatata |
200 |
Q |
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| T |
41984617 |
tac-ttttatacaagatggccttatcagctatcacccttgatcaattgagagaaggaagaaaaagagttgtccaggttctcattcctaactaaacatata |
41984715 |
T |
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| Q |
201 |
atcacatatttcctat |
216 |
Q |
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|||||||||||||||| |
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| T |
41984716 |
atcacatatttcctat |
41984731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 41986875 - 41986960
Alignment:
| Q |
129 |
ttatcacccttgatcaattgagagaaggaagaaaaagagttgtccaggttctcattcctaactatacatataatcacatatttcctat |
216 |
Q |
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| T |
41986875 |
ttatcacccttgatcaattgaaagaaggaataaaa-gagttttc-aggttctcattcctaaccatacatataatcacacatttcctat |
41986960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41986742 - 41986774
Alignment:
| Q |
1 |
ataattgggttgattcagaaaatatgaagcaga |
33 |
Q |
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| T |
41986742 |
ataattgggttcattcagaaaatatgaagcaga |
41986774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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