View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16902_low_24 (Length: 203)

Name: NF16902_low_24
Description: NF16902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16902_low_24
NF16902_low_24
[»] chr4 (15 HSPs)
chr4 (11-199)||(12230807-12230995)
chr4 (11-130)||(13268018-13268137)
chr4 (11-124)||(19727534-19727647)
chr4 (18-130)||(13559361-13559473)
chr4 (11-130)||(18554716-18554830)
chr4 (11-125)||(17419480-17419594)
chr4 (11-132)||(15870940-15871061)
chr4 (11-132)||(15888515-15888636)
chr4 (110-198)||(8808812-8808900)
chr4 (110-198)||(16282892-16282980)
chr4 (110-199)||(11558510-11558599)
chr4 (88-120)||(9886997-9887029)
chr4 (16-130)||(13235237-13235341)
chr4 (88-122)||(20872219-20872253)
chr4 (84-133)||(30275168-30275217)
[»] chr3 (15 HSPs)
chr3 (11-196)||(19186781-19186966)
chr3 (11-132)||(21977104-21977225)
chr3 (11-132)||(21999535-21999656)
chr3 (13-132)||(22161732-22161851)
chr3 (18-130)||(10341062-10341174)
chr3 (37-130)||(10302744-10302837)
chr3 (11-132)||(16357814-16357933)
chr3 (110-199)||(5941660-5941749)
chr3 (110-195)||(17793443-17793528)
chr3 (110-195)||(19101883-19101968)
chr3 (16-132)||(16928556-16928670)
chr3 (118-199)||(21100619-21100700)
chr3 (110-155)||(15958242-15958287)
chr3 (92-133)||(21028871-21028912)
chr3 (92-133)||(25784203-25784244)
[»] chr2 (8 HSPs)
chr2 (11-132)||(29718090-29718211)
chr2 (30-134)||(26861203-26861307)
chr2 (116-193)||(24788601-24788678)
chr2 (110-203)||(44583917-44584010)
chr2 (48-130)||(18985269-18985351)
chr2 (110-199)||(23651789-23651878)
chr2 (112-152)||(21554002-21554042)
chr2 (90-132)||(22497193-22497234)
[»] chr7 (6 HSPs)
chr7 (11-125)||(16068058-16068172)
chr7 (18-130)||(9692984-9693096)
chr7 (110-187)||(22612532-22612609)
chr7 (110-190)||(11657709-11657789)
chr7 (110-190)||(13475071-13475151)
chr7 (89-133)||(18466884-18466928)
[»] scaffold0385 (1 HSPs)
scaffold0385 (11-132)||(16144-16265)
[»] chr8 (8 HSPs)
chr8 (11-130)||(10454067-10454186)
chr8 (11-134)||(15727753-15727879)
chr8 (11-63)||(1683229-1683281)
chr8 (14-70)||(17861385-17861441)
chr8 (12-59)||(1681192-1681239)
chr8 (118-152)||(17883301-17883335)
chr8 (93-134)||(19862363-19862404)
chr8 (93-134)||(19867000-19867041)
[»] chr1 (4 HSPs)
chr1 (11-130)||(21496562-21496680)
chr1 (11-132)||(17451406-17451525)
chr1 (96-132)||(15545327-15545363)
chr1 (94-134)||(43154381-43154421)
[»] chr5 (9 HSPs)
chr5 (11-125)||(25791827-25791941)
chr5 (11-134)||(14137949-14138072)
chr5 (37-128)||(32948837-32948927)
chr5 (18-82)||(23909173-23909237)
chr5 (11-131)||(13938961-13939079)
chr5 (110-195)||(24760922-24761007)
chr5 (84-125)||(25756303-25756344)
chr5 (37-127)||(25581329-25581419)
chr5 (88-132)||(24564983-24565027)
[»] scaffold0010 (1 HSPs)
scaffold0010 (11-125)||(143102-143216)
[»] scaffold0364 (1 HSPs)
scaffold0364 (37-130)||(14588-14681)
[»] scaffold0118 (1 HSPs)
scaffold0118 (11-116)||(11955-12060)
[»] chr6 (7 HSPs)
chr6 (11-130)||(19545140-19545254)
chr6 (11-125)||(14746549-14746663)
chr6 (110-188)||(15119009-15119086)
chr6 (78-132)||(26587843-26587897)
chr6 (72-125)||(22395459-22395512)
chr6 (78-133)||(26588160-26588215)
chr6 (11-44)||(22395518-22395551)
[»] scaffold0408 (1 HSPs)
scaffold0408 (11-125)||(14984-15098)
[»] scaffold0290 (1 HSPs)
scaffold0290 (22-122)||(11838-11938)
[»] scaffold1043 (1 HSPs)
scaffold1043 (11-125)||(516-631)
[»] scaffold0094 (1 HSPs)
scaffold0094 (11-130)||(2496-2609)
[»] scaffold0207 (1 HSPs)
scaffold0207 (37-127)||(737-827)
[»] scaffold0145 (1 HSPs)
scaffold0145 (110-198)||(14735-14823)
[»] scaffold0166 (1 HSPs)
scaffold0166 (110-195)||(3419-3504)
[»] scaffold0381 (1 HSPs)
scaffold0381 (88-120)||(11515-11547)
[»] scaffold0035 (1 HSPs)
scaffold0035 (93-134)||(15397-15438)
[»] scaffold0149 (1 HSPs)
scaffold0149 (78-134)||(35468-35523)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 12230807 - 12230995
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12230807 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagacaaccctcccataatagattaagataccctaaagtgcaaa 12230906  T
Q  111 gattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctttgcttctc 199  Q
    |||| |||||||||||||||||| |||||||||||| ||||| ||||| |||||||||| |||||||||||||||||||||||||||||    
T  12230907 gattatcccccttacctcgaatctgtagaaaccttcagtttggcttgatgttgctacacgagggttctgcttctctccctttgcttctc 12230995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 13268018 - 13268137
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    ||||||||||||||| |||||||||||||||||| | ||||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  13268018 catcatcattctctcgtcaaaattcacatcataacaacaacaatgtattaaaatttaagaaaaccctcccatcataaattaagataccctaaagtgcaaa 13268117  T
Q  111 gattctcccccttacctcga 130  Q
    ||||||||||||||||||||    
T  13268118 gattctcccccttacctcga 13268137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 19727647 - 19727534
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    ||||||||||||||| |||||||||||||||||| || |||||||| ||||||||||||| ||||||||| | |||||||||||||||||||||||||||    
T  19727647 catcatcattctctcgtcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcccgtcatagattaagataccctaaagtgcaaa 19727548  T
Q  111 gattctccccctta 124  Q
    |||||||| |||||    
T  19727547 gattctccgcctta 19727534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 13559473 - 13559361
Alignment:
Q  18 attctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctc 117  Q
    |||||||||||||| ||| |||||||| | ||||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||    
T  13559473 attctctcatcaaacttctcatcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagatactctaaagtgcaaagattctc 13559374  T
Q  118 ccccttacctcga 130  Q
    | |||||||||||    
T  13559373 ctccttacctcga 13559361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 18554830 - 18554716
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||     || |||||||  || |||||||||||||||||||||||||||    
T  18554830 catcatcattttctcatcaaaattcacatcataacagcaacaacatattaaaa-----gacaaccctcatatcatagattaagataccctaaagtgcaaa 18554736  T
Q  111 gattctcccccttacctcga 130  Q
    ||||||||||||||||||||    
T  18554735 gattctcccccttacctcga 18554716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 17419480 - 17419594
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||  || || | |||||||||||||||||||||||||||    
T  17419480 catcatcattctctcatcaaaattcacatcataatagtaacaacattttaaaatttaaaacaaatcttccttcatagattaagataccctaaagtgcaaa 17419579  T
Q  111 gattctcccccttac 125  Q
    |||||| ||||||||    
T  17419580 gattcttccccttac 17419594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 15871061 - 15870940
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    ||||||||||| |||||||||||| ||||||||| || || |    |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||    
T  15871061 catcatcattcactcatcaaaatttacatcataacagaaaaagtgcattaaaatttaagacaaccctcccatcataaattaagataccctaaagtgcaaa 15870962  T
Q  111 gattctcccccttacctcgaat 132  Q
    ||||||||||||||||| ||||    
T  15870961 gattctcccccttaccttgaat 15870940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 15888636 - 15888515
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    ||||||||||| |||||||| ||| ||||||||| ||||| |    |||||||||||||| ||||||||||| ||| ||| ||||| |||||||||||||    
T  15888636 catcatcattcactcatcaatatttacatcataacagcaaaagtgcattaaaatttaagacaaccctcccatcataaatttagatatcctaaagtgcaaa 15888537  T
Q  111 gattctcccccttacctcgaat 132  Q
    ||||||||| ||||||| ||||    
T  15888536 gattctccctcttaccttgaat 15888515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 8808812 - 8808900
Alignment:
Q  110 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctttgcttct 198  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||| ||  | ||| ||||||||||| || ||||||| | |||||||    
T  8808812 agattctcccccttacctcaaatccgtagaaacctttggtttgactcgatatcgctgcactagggttccgcctctctccttctgcttct 8808900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 16282980 - 16282892
Alignment:
Q  110 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctttgcttct 198  Q
    |||||||||||||||||||||| |||||||||| || ||||||||| || |||||| || ||||||||  ||||| || ||||||||||    
T  16282980 agattctcccccttacctcgaacccgtagaaacatttggtttgactcgatgttgctgcagtagggttccacttctttctctttgcttct 16282892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 11558510 - 11558599
Alignment:
Q  110 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctttgcttctc 199  Q
    ||||||||| |||||||| |||||||||||||||||||||||| || || |||| | || ||||||||  ||||||||| | ||||||||    
T  11558510 agattctcctccttacctagaatccgtagaaaccttcggtttggctcgatgttgttgcattagggttccacttctctccatctgcttctc 11558599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 9886997 - 9887029
Alignment:
Q  88 attaagataccctaaagtgcaaagattctcccc 120  Q
    |||||||||||||||||||||||||||||||||    
T  9886997 attaagataccctaaagtgcaaagattctcccc 9887029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 13235237 - 13235341
Alignment:
Q  16 tcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattc 115  Q
    |||||||||| |||||||||||||||||| |  |||||||||||||||          |||| || | ||| ||||| ||||||||||||||||||||||    
T  13235237 tcattctctcgtcaaaattcacatcataacactaacaacatattaaaa----------cccttccgtcataaattaatataccctaaagtgcaaagattc 13235326  T
Q  116 tcccccttacctcga 130  Q
     |||  |||||||||    
T  13235327 ccccgtttacctcga 13235341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Complemental strand, 20872253 - 20872219
Alignment:
Q  88 attaagataccctaaagtgcaaagattctccccct 122  Q
    |||||||||||| ||||||||||||||||||||||    
T  20872253 attaagatacccaaaagtgcaaagattctccccct 20872219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 30275217 - 30275168
Alignment:
Q  84 atagattaagataccctaaagtgcaaagattctcccccttacctcgaatc 133  Q
    ||||| |||| |||||||||||| || ||||||||| |||||||||||||    
T  30275217 atagaataagttaccctaaagtgaaatgattctcccacttacctcgaatc 30275168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 19186781 - 19186966
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    ||||||||||| || ||||||||||||||||||| ||||||||  |||||||||||||||  |||| ||||| ||| |||||||||||||||||||||||    
T  19186781 catcatcattcactgatcaaaattcacatcataacagcaacaatgtattaaaatttaagacgacccacccatcataaattaagataccctaaagtgcaaa 19186880  T
Q  111 gattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctttgctt 196  Q
    |||||||| ||||||||||||||||||||||||||||||||| || || |||||| | ||||||||| |||||||||||| |||||    
T  19186881 gattctcctccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgccctagggttccgcttctctccctctgctt 19186966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 21977104 - 21977225
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    ||||||||||| |||||||||||||||||||||| ||||||||  ||||||||||||||| |||||| |||| ||| |||||||||||||||||||||||    
T  21977104 catcatcattcactcatcaaaattcacatcataacagcaacaatgtattaaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaa 21977203  T
Q  111 gattctcccccttacctcgaat 132  Q
    |||||| |||||||||| ||||    
T  21977204 gattctaccccttaccttgaat 21977225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 21999535 - 21999656
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    ||||||||||| |||||||||||||||||||||| ||||||||  ||||||||||||||| |||||| |||| ||| |||||||||||||||||||||||    
T  21999535 catcatcattcactcatcaaaattcacatcataacagcaacaatgtattaaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaa 21999634  T
Q  111 gattctcccccttacctcgaat 132  Q
    |||||| |||||||||| ||||    
T  21999635 gattctaccccttaccttgaat 21999656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 22161732 - 22161851
Alignment:
Q  13 tcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaaga 112  Q
    ||||||||| |||||||||||||||||||||| ||||||||  |||| |||||||||| |||||| |||| ||| |||||||||||||||||||||||||    
T  22161732 tcatcattcactcatcaaaattcacatcataacagcaacaatgtattcaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaaga 22161831  T
Q  113 ttctcccccttacctcgaat 132  Q
    |||| |||||||||| ||||    
T  22161832 ttctaccccttaccttgaat 22161851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 10341062 - 10341174
Alignment:
Q  18 attctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctc 117  Q
    |||||||||||||||||| |||||||| | ||||||| ||||||||||||||| || |||||||  ||||||||||||||||||||||||||| ||||||    
T  10341062 attctctcatcaaaattctcatcataacatcaacaacttattaaaatttaagacaatcctcccaccatagattaagataccctaaagtgcaaatattctc 10341161  T
Q  118 ccccttacctcga 130  Q
    |||||||| ||||    
T  10341162 ccccttacttcga 10341174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 10302744 - 10302837
Alignment:
Q  37 catcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctcccccttacctcga 130  Q
    |||||||| | ||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||    
T  10302744 catcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctcccccgtacttcga 10302837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 16357933 - 16357814
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    ||||||||||| |||||||| ||| ||||||||| ||||| |    |||||||||||||| |||| |||||| ||| |||||||||||||||||||||||    
T  16357933 catcatcattcactcatcaacatttacatcataacagcaaaagtgcattaaaatttaagacaacc-tcccatcataaattaagataccctaaagtgcaaa 16357835  T
Q  111 gattctcccccttacctcgaat 132  Q
    |||||| |||||||||||||||    
T  16357834 gattct-ccccttacctcgaat 16357814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 5941749 - 5941660
Alignment:
Q  110 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctttgcttctc 199  Q
    |||||||| |||||||||| ||||| |||||||||| ||||||||  || |||||||||||||||||  |||||||||||| ||||||||    
T  5941749 agattctctcccttacctcaaatccatagaaacctttggtttgacccgatgttgctacactagggtttcgcttctctccctatgcttctc 5941660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 17793443 - 17793528
Alignment:
Q  110 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctttgct 195  Q
    |||||||||||||||||||||||| |||||||||||||||||| || || |||||| ||||| ||||| |||||||| ||| ||||    
T  17793443 agattctcccccttacctcgaatctgtagaaaccttcggtttggctcgatgttgctgcactacggttccgcttctcttcctctgct 17793528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 19101883 - 19101968
Alignment:
Q  110 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctttgct 195  Q
    |||||||||||||||||||||||| |||||||||||||||||| || || |||||| ||||| ||||| |||||||| ||| ||||    
T  19101883 agattctcccccttacctcgaatctgtagaaaccttcggtttggctcgatgttgctgcactacggttccgcttctcttcctctgct 19101968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 16928556 - 16928670
Alignment:
Q  16 tcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctc-ccataatagattaagataccctaaagtgcaaagatt 114  Q
    |||| ||||| || ||||||||| |||||   ||||||||||||||||||||||| ||||||  |||| ||||||||||||||  ||||||| ||| |||    
T  16928556 tcatcctctcgtccaaattcacaccataa---caacaacatattaaaatttaagacaaccctttccatcatagattaagatactttaaagtgaaaatatt 16928652  T
Q  115 ctcccccttacctcgaat 132  Q
    ||| ||||||||||||||    
T  16928653 ctctcccttacctcgaat 16928670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 21100700 - 21100619
Alignment:
Q  118 ccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctttgcttctc 199  Q
    ||||||||||| ||||| ||||||||||||||||| || || |||||| ||||||||||| |||||||||||  ||||||||    
T  21100700 ccccttacctcaaatccatagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccccctgcttctc 21100619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 15958287 - 15958242
Alignment:
Q  110 agattctcccccttacctcgaatccgtagaaaccttcggtttgact 155  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  15958287 agattctcccccttacctcaaatccgtagaaaccttcggttggact 15958242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 21028871 - 21028912
Alignment:
Q  92 agataccctaaagtgcaaagattctcccccttacctcgaatc 133  Q
    ||||||||||||||| || || ||||||||||||||||||||    
T  21028871 agataccctaaagtgaaaggaatctcccccttacctcgaatc 21028912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 25784244 - 25784203
Alignment:
Q  92 agataccctaaagtgcaaagattctcccccttacctcgaatc 133  Q
    ||||||||||||||| || || ||||||||||||||||||||    
T  25784244 agataccctaaagtgaaaggaatctcccccttacctcgaatc 25784203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 4e-46; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 29718211 - 29718090
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| |||| |||||||||||||| ||||||||||||    
T  29718211 catcatcattctctcatcaaaattcacatcataacaacaacaacatattaaaatttaagacaacccttccatcatagattaagatactctaaagtgcaaa 29718112  T
Q  111 gattctcccccttacctcgaat 132  Q
     |||||||||||||||||||||    
T  29718111 tattctcccccttacctcgaat 29718090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 26861307 - 26861203
Alignment:
Q  30 aaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctcccccttacctcg 129  Q
    ||||| ||| ||||| ||||| || |||||||||||||| | |||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||    
T  26861307 aaattaacaccataacagcaataatatattaaaatttaatacaacccttccatcatggattaagataccctaaagtgcaaagaatctcccccttacctcg 26861208  T
Q  130 aatcc 134  Q
    |||||    
T  26861207 aatcc 26861203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 24788601 - 24788678
Alignment:
Q  116 tcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctttg 193  Q
    ||||||||||||||||||||||||||||||||||||| || || |||||| ||||||||||| |||||||||||||||    
T  24788601 tcccccttacctcgaatccgtagaaaccttcggtttggctagaagttgctgcactagggttccgcttctctccctttg 24788678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 44584010 - 44583917
Alignment:
Q  110 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctttgcttctcctct 203  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| ||||||| ||| |||||||||| | ||||| ||||||    
T  44584010 agattctcccccttacctcaaatccgtagaaacctttggtttgacttgatgttgctgcactaggattccgcttctctccatctgcttttcctct 44583917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 18985351 - 18985269
Alignment:
Q  48 caacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctcccccttacctcga 130  Q
    ||||||||||||||||||||| | |||||||| || |||||||| |||||||||| ||||||||||||||||||||| |||||    
T  18985351 caacaacatattaaaatttaatacaaccctcctatcatagattacgataccctaatgtgcaaagattctcccccttatctcga 18985269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 23651878 - 23651789
Alignment:
Q  110 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctttgcttctc 199  Q
    |||||||||||||||||||||||| ||||| |||||| ||||| || || |||||| || |||||||| |||||||| ||||||||||||    
T  23651878 agattctcccccttacctcgaatctgtagataccttcagtttggctcgatgttgctgcattagggttccgcttctctacctttgcttctc 23651789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 21554042 - 21554002
Alignment:
Q  112 attctcccccttacctcgaatccgtagaaaccttcggtttg 152  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  21554042 attctcccccttacctcgaatccgtagaaaccttcgttttg 21554002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 22497234 - 22497193
Alignment:
Q  90 taagataccctaaagtgcaaagattctcccccttacctcgaat 132  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  22497234 taagataccctaa-gtgcaaagattctcccccttagctcgaat 22497193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 16068172 - 16068058
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    |||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| | |||||||||||||||||||| ||||||    
T  16068172 catcatcattttctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 16068073  T
Q  111 gattctcccccttac 125  Q
    |||||||||||||||    
T  16068072 gattctcccccttac 16068058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 9693096 - 9692984
Alignment:
Q  18 attctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctc 117  Q
    |||||||||||||| ||| |||||||| | ||||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||    
T  9693096 attctctcatcaaacttctcatcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagatactctaaagtgcaaagattctc 9692997  T
Q  118 ccccttacctcga 130  Q
    | |||||||||||    
T  9692996 ctccttacctcga 9692984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 22612609 - 22612532
Alignment:
Q  110 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||| || || |||| | ||||||||||| |||||||||    
T  22612609 agattctcccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgttgcactagggttccgcttctctc 22612532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 11657709 - 11657789
Alignment:
Q  110 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccct 190  Q
    |||||||| ||||||||||||||||||||||||||| |||||| ||||| || ||| |||||||||||  |||||||||||    
T  11657709 agattctcacccttacctcgaatccgtagaaacctttggtttggcttgatgtagctgcactagggttcctcttctctccct 11657789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 13475151 - 13475071
Alignment:
Q  110 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccct 190  Q
    ||||||| ||| |||||||||||||||||||||||||| |||| || || |||||| ||||||||||| ||||||||||||    
T  13475151 agattcttccctttacctcgaatccgtagaaaccttcgatttgcctcgatgttgctgcactagggttcagcttctctccct 13475071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 18466928 - 18466884
Alignment:
Q  89 ttaagataccctaaagtgcaaagattctcccccttacctcgaatc 133  Q
    ||||||||||||||||   |||||||||||||||||| |||||||    
T  18466928 ttaagataccctaaaggaaaaagattctcccccttacatcgaatc 18466884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 16144 - 16265
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    ||||||||||| |||||||||||||||||||||| ||||||||  |||||||||||||||  |||||||||| ||| |||||||||||||||||| ||||    
T  16144 catcatcattcactcatcaaaattcacatcataaaagcaacaatgtattaaaatttaagacgaccctcccatcataaattaagataccctaaagtacaaa 16243  T
Q  111 gattctcccccttacctcgaat 132  Q
    ||||||||||||||||||||||    
T  16244 gattctcccccttacctcgaat 16265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 10454186 - 10454067
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| || || ||||| ||||| |||||||||||||||||||||| ||||    
T  10454186 catcatcattctctcatcaaaattcacaccataacagcaaaaacatattaaaatataggacaacccacccatcatagattaagataccctaaagttcaaa 10454087  T
Q  111 gattctcccccttacctcga 130  Q
    |||||| |||||||||||||    
T  10454086 gattcttccccttacctcga 10454067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 15727753 - 15727879
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctc------ccataatagattaagataccctaaag 104  Q
    |||| |||| ||||||| ||||||||||||||||   ||||||||||||||||| ||| | |||||||      |||| |||||||||||||||||||||    
T  15727753 catcttcatcctctcataaaaattcacatcataa---caacaacatattaaaatctaatacaaccctctcaatcccatcatagattaagataccctaaag 15727849  T
Q  105 tgcaaagattctcccccttacctcgaatcc 134  Q
    || || ||||||||||||||||||||||||    
T  15727850 tgtaaggattctcccccttacctcgaatcc 15727879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 1683229 - 1683281
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaa 63  Q
    |||||||| |||||||||||||||||||||||||  |||||||||||||||||    
T  1683229 catcatcagtctctcatcaaaattcacatcataaccgcaacaacatattaaaa 1683281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 17861441 - 17861385
Alignment:
Q  14 catcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaaga 70  Q
    |||||||||||||||||||||||| |||||| || |||||||| |||||||||||||    
T  17861441 catcattctctcatcaaaattcacgtcataacagtaacaacattttaaaatttaaga 17861385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 1681192 - 1681239
Alignment:
Q  12 atcatcattctctcatcaaaattcacatcataatagcaacaacatatt 59  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||||    
T  1681192 atcatcagtctctcatcaaaattcacatcataaccgcaacaacatatt 1681239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 17883301 - 17883335
Alignment:
Q  118 ccccttacctcgaatccgtagaaaccttcggtttg 152  Q
    ||||||||||||||||| |||||||||||||||||    
T  17883301 ccccttacctcgaatccatagaaaccttcggtttg 17883335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 19862363 - 19862404
Alignment:
Q  93 gataccctaaagtgcaaagattctcccccttacctcgaatcc 134  Q
    |||||||||||||| || || |||||||||||||||||||||    
T  19862363 gataccctaaagtgaaaggaatctcccccttacctcgaatcc 19862404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 19867000 - 19867041
Alignment:
Q  93 gataccctaaagtgcaaagattctcccccttacctcgaatcc 134  Q
    |||||||||||||| || || |||||||||||||||||||||    
T  19867000 gataccctaaagtgaaaggaatctcccccttacctcgaatcc 19867041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 21496562 - 21496680
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    ||||||||||||||||| || ||||| |||||| ||| ||||||||||| |||||||||| |||||||||| | ||||||||||||||||||||||||||    
T  21496562 catcatcattctctcataaatattcatatcatattagaaacaacatatttaaatttaagataaccctcccaca-tagattaagataccctaaagtgcaaa 21496660  T
Q  111 gattctcccccttacctcga 130  Q
    ||||||||||||||||||||    
T  21496661 gattctcccccttacctcga 21496680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 17451406 - 17451525
Alignment:
Q  11 catcatcattctctcatcaaaat-tcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaa 109  Q
    |||||| | |||||||||| ||| ||||||||||| ||||||| ||| |||| | ||||  |  |||||| || ||| ||||||||||||||||||||||    
T  17451406 catcataaatctctcatcacaatctcacatcataagagcaacatcatcttaagaattaatta--ccctcc-atcatatattaagataccctaaagtgcaa 17451502  T
Q  110 agattctcccccttacctcgaat 132  Q
    |||||||  ||||| ||||||||    
T  17451503 agattctatcccttccctcgaat 17451525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 15545327 - 15545363
Alignment:
Q  96 accctaaagtgcaaagattctcccccttacctcgaat 132  Q
    ||||||||||||||||||||| |||||||||||||||    
T  15545327 accctaaagtgcaaagattctaccccttacctcgaat 15545363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 43154421 - 43154381
Alignment:
Q  94 ataccctaaagtgcaaagattctcccccttacctcgaatcc 134  Q
    ||||||||||||  | |||||||||||||||||||||||||    
T  43154421 ataccctaaagttaagagattctcccccttacctcgaatcc 43154381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 25791827 - 25791941
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    ||||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||||||||||||  | |||||||||||||||||||||| ||||    
T  25791827 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagaaaaccctcctgtcatagattaagataccctaaagttcaaa 25791926  T
Q  111 gattctcccccttac 125  Q
    ||||||||| |||||    
T  25791927 gattctccctcttac 25791941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 14137949 - 14138072
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    |||||| ||||  ||||||||||||||| ||||| | |||||||||||||| |||||||| ||||||||||| | | | ||||||||||||||||  | |    
T  14137949 catcattattccttcatcaaaattcacagcataacaacaacaacatattaagatttaagacaaccctcccatcaaataataagataccctaaagtaaaga 14138048  T
Q  111 gattctcccccttacctcgaatcc 134  Q
    |||| |||||||||||||||||||    
T  14138049 gattgtcccccttacctcgaatcc 14138072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 32948837 - 32948927
Alignment:
Q  37 catcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctcccccttacctc 128  Q
    |||||||| |||||||||||||||||||| |||| ||||||||||| | ||||| |||||| ||||||||||||||||||||||||||||||    
T  32948837 catcataacagcaacaacatattaaaattaaagacaaccctcccatca-agatttagatactctaaagtgcaaagattctcccccttacctc 32948927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 23909173 - 23909237
Alignment:
Q  18 attctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccat 82  Q
    |||||||||||||||||| |||||||| | ||||||| ||||||||||||||| |||||||||||    
T  23909173 attctctcatcaaaattctcatcataacaacaacaacttattaaaatttaagacaaccctcccat 23909237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 13938961 - 13939079
Alignment:
Q  11 catcatcattctctcatcaaaat-tcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaa 109  Q
    |||||| | |||||||||||||| ||||||||||| | ||||||||| |||| | ||||  | ||| ||| || ||| |||||||||| |||||||||||    
T  13938961 catcataaatctctcatcaaaatctcacatcataacaacaacaacatcttaagaattaa--acaccgtcc-atcatatattaagatacactaaagtgcaa 13939057  T
Q  110 agattctcccccttacctcgaa 131  Q
    ||||||| || |||||||||||    
T  13939058 agattcttcctcttacctcgaa 13939079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 24760922 - 24761007
Alignment:
Q  110 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctttgct 195  Q
    |||||| ||| |||||||||||||| ||||||||||||||||| || |  |||| | ||||||||||| | |||||||||| ||||    
T  24760922 agattccccctcttacctcgaatccttagaaaccttcggtttggctcggtgttgttgcactagggttcaggttctctccctatgct 24761007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 25756344 - 25756303
Alignment:
Q  84 atagattaagataccctaaagtgcaaagattctcccccttac 125  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  25756344 atagattaagataccctaaagtgcaaagattctccctcttac 25756303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 25581419 - 25581329
Alignment:
Q  37 catcataatagcaacaacata-ttaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctcccccttacct 127  Q
    |||||||| | |||||||||| |||||||| ||||    ||||| || |||||| |||||||||||||||| ||||||||||||||||||||    
T  25581419 catcataacaacaacaacataattaaaattaaagacgttcctccaatcatagat-aagataccctaaagtggaaagattctcccccttacct 25581329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 24564983 - 24565027
Alignment:
Q  88 attaagataccctaaagtgcaaagattctcccccttacctcgaat 132  Q
    ||||||| ||||||||||||||||||| | ||| |||||||||||    
T  24564983 attaagagaccctaaagtgcaaagatttttcccattacctcgaat 24565027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 75; Significance: 9e-35; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 143102 - 143216
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    |||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||||| |||| |||||| ||||||||||||||| ||||||| |||    
T  143102 catcatcaatctctcatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccttcccatcatagattaagataccataaagtgaaaa 143201  T
Q  111 gattctcccccttac 125  Q
    ||||| |||||||||    
T  143202 gattcacccccttac 143216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 14588 - 14681
Alignment:
Q  37 catcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctcccccttacctcga 130  Q
    |||||||| |||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14588 catcataacagcaacaacatattgaaattaaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctcccccttacctcga 14681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 11955 - 12060
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    |||||||||||||||||||||||||||||||||| ||||||||   |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||    
T  11955 catcatcattctctcatcaaaattcacatcataacagcaacaatgaattaaaatttaagacaaccctcccatcataaattaagataccctaaagtgcaaa 12054  T
Q  111 gattct 116  Q
     |||||    
T  12055 tattct 12060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 19545254 - 19545140
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    |||||||||| |||||||||||||||||| |||| ||||||||||||||||||     || |||||||  || |||||||||||||||||||||||||||    
T  19545254 catcatcattttctcatcaaaattcacattataacagcaacaacatattaaaa-----gacaaccctcatatcatagattaagataccctaaagtgcaaa 19545160  T
Q  111 gattctcccccttacctcga 130  Q
    ||||||||||||||||||||    
T  19545159 gattctcccccttacctcga 19545140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 14746549 - 14746663
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    ||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||||  |||| || | | |||||||||||||||||| ||||||||    
T  14746549 catcatcattctctcataaaaattcacatcataacagtaacaacattttaaaatttaagtcaaccttctcctcatagattaagataccctatagtgcaaa 14746648  T
Q  111 gattctcccccttac 125  Q
    |||||||||||||||    
T  14746649 gattctcccccttac 14746663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 188
Target Start/End: Original strand, 15119009 - 15119086
Alignment:
Q  110 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctcc 188  Q
    ||||||| |||||||||||||||| ||||||||||||| |||  || || |||||| ||||||||||||||||||||||    
T  15119009 agattcttccccttacctcgaatc-gtagaaaccttcgatttagctcgatgttgctgcactagggttctgcttctctcc 15119086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 26587843 - 26587897
Alignment:
Q  78 cccataatagattaagataccctaaagtgcaaagattctcccccttacctcgaat 132  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  26587843 cccatcatagattaagataccctaaagtgaaaagattctcccctttacctcgaat 26587897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 22395512 - 22395459
Alignment:
Q  72 aaccctcccataatagattaagataccctaaagtgcaaagattctcccccttac 125  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  22395512 aaccctcccatcatatattaagataccctaaagtgcaaagactctcccccttac 22395459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 26588160 - 26588215
Alignment:
Q  78 cccataatagattaagataccctaaagtgcaaagattctcccccttacctcgaatc 133  Q
    ||||| ||||||||||||||||||||||| || ||  |||||||||||||||||||    
T  26588160 cccatcatagattaagataccctaaagtgaaaggaacctcccccttacctcgaatc 26588215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 22395551 - 22395518
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataa 44  Q
    ||||||| ||||||||||||||||||||||||||    
T  22395551 catcatctttctctcatcaaaattcacatcataa 22395518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 14984 - 15098
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    ||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||||  |||| || | | |||||||||||||||||| ||||||||    
T  14984 catcatcattctctcataaaaattcacatcataacagtaacaacattttaaaatttaagtcaaccttctcctcatagattaagataccctatagtgcaaa 15083  T
Q  111 gattctcccccttac 125  Q
    |||||||||||||||    
T  15084 gattctcccccttac 15098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 11938 - 11838
Alignment:
Q  22 tctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctccccc 121  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||| | |||||||| || ||| |||| || ||||||||||||||||||||||||||    
T  11938 tctcatcaaaatttacatcataacagcaacaacatattaaaatttaatacaaccctcctatcataaattacgacaccctaaagtgcaaagattctccccc 11839  T
Q  122 t 122  Q
    |    
T  11838 t 11838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 631 - 516
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaa-tttaagaaaaccctcccataatagattaagataccctaaagtgcaa 109  Q
    ||||||||||||||||| |||||||| ||||||| || |||||||| |||||| ||||||| ||||||| ||| |||||||||||||| ||| | |||||    
T  631 catcatcattctctcataaaaattcatatcataacagtaacaacattttaaaaatttaagacaaccctctcatcatagattaagatactctacattgcaa 532  T
Q  110 agattctcccccttac 125  Q
    ||||||||||||||||    
T  531 agattctcccccttac 516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 2609 - 2496
Alignment:
Q  11 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaa 110  Q
    |||||||||| |||| |||||||||||||||||  ||||||||||||||||||| |||     |||||  || |||||||||||||||||||| ||||||    
T  2609 catcatcattttctcgtcaaaattcacatcataccagcaacaacatattaaaatataa-----ccctcatatcatagattaagataccctaaa-tgcaaa 2516  T
Q  111 gattctcccccttacctcga 130  Q
    ||||||||||||||||||||    
T  2515 gattctcccccttacctcga 2496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 827 - 737
Alignment:
Q  37 catcataatagcaacaacata-ttaaaatttaagaaaaccctcccataatagattaagataccctaaagtgcaaagattctcccccttacct 127  Q
    |||||||| |||||||||||| |||||||| |||| |||||||| || |||||||||||||||||||||||||||| |||||||||||||||    
T  827 catcataacagcaacaacataattaaaattaaagacaaccctccaatcatagattaagataccctaaagtgcaaag-ttctcccccttacct 737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 14735 - 14823
Alignment:
Q  110 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctttgcttct 198  Q
    |||||||||||||||||||||| |||||||||| || ||||||||| || |||||| || ||||||||  ||||| || ||||||||||    
T  14735 agattctcccccttacctcgaacccgtagaaacatttggtttgactcgatgttgctgcagtagggttccacttctttctctttgcttct 14823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 3419 - 3504
Alignment:
Q  110 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctttgct 195  Q
    |||||| ||| |||||||||||||| ||||||||||||||||| || |  |||| | ||||||||||| | |||||||||| ||||    
T  3419 agattccccctcttacctcgaatccttagaaaccttcggtttggctcggtgttgttgcactagggttcaggttctctccctatgct 3504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 11547 - 11515
Alignment:
Q  88 attaagataccctaaagtgcaaagattctcccc 120  Q
    |||||||||||||||||||||||||||||||||    
T  11547 attaagataccctaaagtgcaaagattctcccc 11515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 15438 - 15397
Alignment:
Q  93 gataccctaaagtgcaaagattctcccccttacctcgaatcc 134  Q
    |||||||||||||| || || |||||||||||||||||||||    
T  15438 gataccctaaagtgaaaggaatctcccccttacctcgaatcc 15397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 35523 - 35468
Alignment:
Q  78 cccataatagattaagataccctaaagtgcaaagattctcccccttacctcgaatcc 134  Q
    ||||| ||||||||| |||||||||||||  | || |||||||||||||||||||||    
T  35523 cccatcatagattaa-ataccctaaagtggtaggaatctcccccttacctcgaatcc 35468  T

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