View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16902_low_3 (Length: 505)
Name: NF16902_low_3
Description: NF16902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16902_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 39 - 488
Target Start/End: Original strand, 39998748 - 39999197
Alignment:
| Q |
39 |
ataaaagattaacacaacctggggagggtggagtaaaaagcatcagctatgtgctatcactacaatatgaaggttaatatcagttatgtctaagcagata |
138 |
Q |
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| T |
39998748 |
ataaaagattaacacaacctggggagggtggagtaaaaagcatcagctatgtgctatcactacaatatgaaggttaatatcagttatgtctaagcagata |
39998847 |
T |
|
| Q |
139 |
cctatcccagactaagagcaacaaactccaagagttaggtttggtggtaaaatgtaaaatgacatgtcttggatccggaggtttcagatttgagtcagtt |
238 |
Q |
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| T |
39998848 |
cctatcccagactaagagcaacaaactccaagagttaggtttggtggtaaaatgtaaaatgacaggtcttggatccggaggtttcagatttgagtcagtt |
39998947 |
T |
|
| Q |
239 |
atacctttgaagattggaagtgctctttaagggcaaaggtctttcctaccttatactggtgcatcttcccctcatcctaaatttatttcaggcacattga |
338 |
Q |
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| T |
39998948 |
atacctttgaagattggaagtgctctttaagggcaaaggtctttcctaccttatactggtgcatcgtcccctcatcctaaatttatttcaggcacattga |
39999047 |
T |
|
| Q |
339 |
attagctggttgaagaataaattaattttatgtttgtaaagggcaggactggagtgcccctcaccctagacttttttattatgaaaaaatagtagggcat |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39999048 |
attagctggttgaagaataaattaattttatgtttgtaaagggcaggactggagtgcccctcaccctagacttttttattatgaaaaaatagtaggacat |
39999147 |
T |
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| Q |
439 |
gcatgctattgaggtctagcgcaaataattggtacacatggtgtatgagt |
488 |
Q |
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| T |
39999148 |
gcatgctattgaggtctagcgcaaataattggtacacatggtgtatgagt |
39999197 |
T |
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