View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16902_low_7 (Length: 385)
Name: NF16902_low_7
Description: NF16902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16902_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 161 - 372
Target Start/End: Complemental strand, 41984362 - 41984151
Alignment:
| Q |
161 |
acaaatatctgtaatgggatctgcatgatcagttcatcatctatagtttttaacaaggccttcactaatgttgatttcactattctgtacttagtaagga |
260 |
Q |
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| T |
41984362 |
acaaatatctgtaatgggatctgcatgatcagttcatcatctatagtttttaacaaggccttcactaatgttgatttcactattctgtacttagtaagga |
41984263 |
T |
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| Q |
261 |
tagcaaattaaaaaacaatttctcccaacatgaccaattatttcttcatgttactggactgnnnnnnncctaattcacaaatgctgtattaatcacccta |
360 |
Q |
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| T |
41984262 |
tagcaaattaaaaaacactttctcccaacatgaccaattatttcttcatgttactggactgtttttttcctaattcacaaatgctgtattaatcacccta |
41984163 |
T |
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| Q |
361 |
accatatatgtg |
372 |
Q |
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|||||||||||| |
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| T |
41984162 |
accatatatgtg |
41984151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 41984479 - 41984367
Alignment:
| Q |
8 |
cataactaaatacagacataatgtggggtctaggattcatataattaacagcaaaggaaacatttccatacagcttctacttaatattatcagtctccat |
107 |
Q |
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| T |
41984479 |
cataactaaatacagacataatgtggggtctaggattcatataattaacagcaaaggaaacatttccatacagcttctacttaatattatcagtctccat |
41984380 |
T |
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| Q |
108 |
ttcacctcattgc |
120 |
Q |
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| T |
41984379 |
ttcacctcattgc |
41984367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 373
Target Start/End: Complemental strand, 41986474 - 41986300
Alignment:
| Q |
207 |
tttttaacaaggccttcactaatgttgatttcactattctgtacttag--------taaggatagcaaattaaaaaacaa----tttctcccaacatgac |
294 |
Q |
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| T |
41986474 |
tttttaacaaggcctccactgatgttcttttcactgttctatacttagaaaggaactaaggatagcaa--taaaaaacaaaaaatttcgccaaacatgac |
41986377 |
T |
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| Q |
295 |
caattatttcttcatgttactggactgnnnnnnncctaattcacaaatgctgtattaatcaccctaaccatatatgtga |
373 |
Q |
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||||||||||||||||||||| | |||| ||||||||| |||||||||||||||||||| ||| ||||| |
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| T |
41986376 |
taattatttcttcatgttactga--tttttttttcctacttcacaaatactgtattaatcaccctaaccttatttgtga |
41986300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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