View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16902_low_8 (Length: 335)
Name: NF16902_low_8
Description: NF16902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16902_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 6 - 318
Target Start/End: Complemental strand, 35173916 - 35173604
Alignment:
| Q |
6 |
agaagcataggacacaacctcaccaaaccttaaatcaacagaacatagtgtacgaggtacaacagaaaaacccaacacacgactcacaattgcatatgta |
105 |
Q |
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| T |
35173916 |
agaatcataagacacaacctcaccaaaccttaaatcaacagaacatagtgtacgaggtacaacagaaaaacccaacacacgactcacaattgcatatgta |
35173817 |
T |
|
| Q |
106 |
tcattaaacttgtcttgtttcaaactatcattcacactcaaacgtagatcacgtttaaaagcttcttcagaaggaacaaaaactgtgaaagcaagatctt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35173816 |
tcattaaacttgtcttgtttcaaactatcattcacactcaaacgtagatcacgtttaaaagcttcttcagaaggaacaaaaactgtgaaagcaagatctt |
35173717 |
T |
|
| Q |
206 |
gtggtaacatttcaaccatcatttcaccaaacttgcctaagttaaaatcttgaatggaaatttttctggatctggtaattgagtcaaaccccattttcct |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35173716 |
gtggtaacatttcaaccatcatttcaccaaacttgcctaagttaaaatcttgaatggaaatttttctggatctggtaattgagtcaaaccccattttcct |
35173617 |
T |
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| Q |
306 |
attagtcttgttt |
318 |
Q |
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||||||||||||| |
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| T |
35173616 |
attagtcttgttt |
35173604 |
T |
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