View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16902_low_9 (Length: 324)
Name: NF16902_low_9
Description: NF16902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16902_low_9 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 12042769 - 12043073
Alignment:
| Q |
1 |
acatgcattagcaattctaatattataggcaaaacaaccaagactttcacctctgcaatttctgaagattccttcacaaggtgcaaggccagtggatccc |
100 |
Q |
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| T |
12042769 |
acatgcattagcaattctaatattataggcaaaacaaccaagactttcacctctgcaatttctgaagattccttcacaaggtgcaaggccagtggatccc |
12042868 |
T |
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| Q |
101 |
aaggaggcaccatcagcattacattttatccatgattgaataggtgtggctgccataaaacctcaatgattttaggtgctctagaatgatgacagttgac |
200 |
Q |
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| T |
12042869 |
aaggaggcaccatcagtattacattttatccatgattgaataggtgtggctgccataaaacctcaatgattttagatgctctagaattatgacagttgac |
12042968 |
T |
|
| Q |
201 |
attaaaagctttcaacaatcaaagtcagcaatgaaatttattgtggtcaaagaggttaagtttcctgagatagaggtgctaacaataatcatattaacac |
300 |
Q |
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| T |
12042969 |
attaaaagctttcaacaatcaaagtcagcaatgaaatttattgtggtcaaagaggttaagtttcctgagatagaggtgctaacaataatcatattaacac |
12043068 |
T |
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| Q |
301 |
aagtt |
305 |
Q |
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| T |
12043069 |
aagtt |
12043073 |
T |
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Target: scaffold0196 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 305
Target Start/End: Complemental strand, 30593 - 30293
Alignment:
| Q |
4 |
tgcattagcaattctaatattataggcaaaacaaccaagactttcacctctgcaatttctgaagattccttcacaaggtgcaaggccagtggatcccaag |
103 |
Q |
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| T |
30593 |
tgcattagcaataccaatgttataagcaaaacaacccagactgtctcctttgcaatctctaaagatacctccacaagctgccaaaccagtggaacctaga |
30494 |
T |
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| Q |
104 |
gaggcaccatcagcattacattttatccatgattgaataggtgtggctgccataaaacctcaatgattttaggtgctctagaatgatgacagttgacatt |
203 |
Q |
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| T |
30493 |
gaggcaccgtcagtattacattttacccaagattgaatag--ggggttgccataaaacttcaatgattttgggagctctagacagatggcatttcacatt |
30396 |
T |
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| Q |
204 |
aaaagctttcaac-aatcaaagtcagcaatgaaatttattgtggtcaaagaggttaagtttcctgagatagaggtgctaacaataatcatattaacacaa |
302 |
Q |
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| T |
30395 |
gaaggctttcagcaaaacaaaattatgaatggaattgttggtggtcaaagatgttaagtttccagatgtagaggtgctggcaacaatcatgttgacacaa |
30296 |
T |
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| Q |
303 |
gtt |
305 |
Q |
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||| |
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| T |
30295 |
gtt |
30293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 276
Target Start/End: Original strand, 16343802 - 16344039
Alignment:
| Q |
38 |
ccaagactttcacctctgcaatttctgaagattccttcacaaggtgcaaggccagtggatcccaaggaggcaccatcagcattacattttatccatgatt |
137 |
Q |
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||||||||||| || ||||||||| | ||||||||| |||||| ||| | |||| || || |||| |||||||||| ||||||||| ||||| |||| |
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| T |
16343802 |
ccaagactttccccactgcaatttttaaagattcctccacaagctgctaaaccagaagaacctaaggttgcaccatcagtattacatttgatccaagatt |
16343901 |
T |
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| Q |
138 |
gaataggtgtggctgccataaaacctcaatgattttaggtgctctagaatgatgacagttgacattaaaagctttcaac-aatcaaagtcagcaatgaaa |
236 |
Q |
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| T |
16343902 |
gaatag--gagggtaaaatatcacttctatgattttgggagcttttgaatggtgccaattaacattaaaagctttcaacaaaacaaaatcagtgatggag |
16343999 |
T |
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| Q |
237 |
tttattgtggtcaaagaggttaagtttcctgagatagagg |
276 |
Q |
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| T |
16344000 |
tttgttgttgttaatgaggttaagttacctgagatagagg |
16344039 |
T |
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