View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16903_high_4 (Length: 398)
Name: NF16903_high_4
Description: NF16903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16903_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 369
Target Start/End: Complemental strand, 10194472 - 10194107
Alignment:
| Q |
8 |
tgagatgaactgtgctggcttgagttttggaaacaaagcattcgattttgaataagtaacgcatttaaagataaatatgatgaaagacaagcgaagtgca |
107 |
Q |
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| T |
10194472 |
tgagatgagctgtgctggcttgagttttggaaacaaagcattctattttgaataagtaacgcatttaaagataaatatgatgaaagacaagcgaagtgca |
10194373 |
T |
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| Q |
108 |
aaagatccgatcactacttatacggtttagggttttct---------tgtcaattataatttgcgatttatgatcaaacactgttaggcggcatgttcag |
198 |
Q |
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| T |
10194372 |
aaagatccgatcactacttatacggtttagggttttctggtttttcttgtcaattataatttgcgatttatgatcaaacactgttaggctgcatgttcag |
10194273 |
T |
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| Q |
199 |
taacagatgagttcgaattccttgatcctgatatcaggatgcctggaatggtgttagggacagaaaattttgataagttccatgttgcagtgaatgcaat |
298 |
Q |
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| T |
10194272 |
taacagatgagttcgaattccttgatcctgatatcaggatgcctggaatggtgttagggacagaaaattttgataagttccatgttgcagtgaatgcaat |
10194173 |
T |
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| Q |
299 |
tgatgcgatgcagtttatgacaaattgcaataccagattatgtactactggtataaggttatagaacacat |
369 |
Q |
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| T |
10194172 |
tgattc-----agtttatgacaaattgcaataccagattatgtactactggtataaggttatagaacacat |
10194107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 19459235 - 19459304
Alignment:
| Q |
8 |
tgagatgaactgtgctggcttgagttttggaaacaaagcattcgattttgaataagtaacgcatttaaag |
77 |
Q |
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| T |
19459235 |
tgagatgagctgtgctggcttgagttttggaaacaaagagtttgattttgaacaagtaacgcattcaaag |
19459304 |
T |
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