View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16903_low_1 (Length: 701)

Name: NF16903_low_1
Description: NF16903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16903_low_1
NF16903_low_1
[»] chr2 (5 HSPs)
chr2 (14-201)||(202955-203142)
chr2 (253-324)||(203517-203588)
chr2 (253-304)||(202852-202903)
chr2 (328-470)||(11673416-11673559)
chr2 (133-199)||(203397-203463)
[»] chr4 (4 HSPs)
chr4 (515-701)||(36087414-36087615)
chr4 (325-491)||(36087229-36087395)
chr4 (363-427)||(4928697-4928761)
chr4 (355-474)||(32007912-32008033)
[»] chr6 (2 HSPs)
chr6 (253-324)||(22681487-22681558)
chr6 (328-426)||(10385331-10385431)
[»] chr5 (5 HSPs)
chr5 (401-470)||(36855236-36855305)
chr5 (365-456)||(10240684-10240776)
chr5 (328-426)||(14570280-14570380)
chr5 (344-471)||(5069100-5069229)
chr5 (328-385)||(3068042-3068100)
[»] scaffold0755 (2 HSPs)
scaffold0755 (41-93)||(4629-4681)
scaffold0755 (253-304)||(4398-4449)
[»] chr8 (8 HSPs)
chr8 (43-123)||(32327267-32327347)
chr8 (328-456)||(41643153-41643283)
chr8 (37-122)||(25864317-25864402)
chr8 (288-324)||(32327040-32327076)
chr8 (355-442)||(7888408-7888492)
chr8 (328-392)||(11539082-11539147)
chr8 (328-426)||(7503954-7504054)
chr8 (359-430)||(20684145-20684217)
[»] scaffold0072 (2 HSPs)
scaffold0072 (253-327)||(49180-49254)
scaffold0072 (253-304)||(48440-48491)
[»] chr7 (6 HSPs)
chr7 (37-112)||(48577684-48577759)
chr7 (328-417)||(31446971-31447062)
chr7 (368-442)||(31078474-31078549)
chr7 (328-389)||(2916196-2916258)
chr7 (405-475)||(35195352-35195422)
chr7 (362-441)||(18442037-18442117)
[»] chr1 (8 HSPs)
chr1 (36-122)||(10463169-10463255)
chr1 (36-122)||(43732823-43732909)
chr1 (365-470)||(8904724-8904829)
chr1 (397-491)||(22572076-22572170)
chr1 (392-469)||(26515676-26515752)
chr1 (328-430)||(13017752-13017856)
chr1 (401-473)||(27232304-27232376)
chr1 (37-76)||(50672032-50672071)
[»] chr3 (4 HSPs)
chr3 (37-121)||(5913238-5913322)
chr3 (363-474)||(3519303-3519415)
chr3 (332-474)||(6056609-6056753)
chr3 (362-470)||(5323841-5323949)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 5e-92; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 203142 - 202955
Alignment:
Q  14 cacagaaaacacactaaagcaaacctgtgacaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaacg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  203142 cacagaaaacacactaaagcaaacctgtgacaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaaca 203043  T
Q  114 agtggtggtgtctatggggacgagtggtggtgcctatgcggttgaagaaaaccagagaaggggggagactgtgtttgtgtgcatcagg 201  Q
    |||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  203042 agtggtggtgcctatggggacgagtggtggtgcttatggggttgaagaaaaccagagaaggggggagactgtgtttgtgtgcatcagg 202955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 203517 - 203588
Alignment:
Q  253 attagcattgccacgtgtcaaaatctaattgggttaatggcaccatggcactatggcactgaagtgcttccc 324  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||    
T  203517 attagcattgccacgtgtcaaaatctgattggggtaatggcaccatggcactatggcaccgaagtgcttccc 203588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 202903 - 202852
Alignment:
Q  253 attagcattgccacgtgtcaaaatctaattgggttaatggcaccatggcact 304  Q
    |||||||||||||||||||||||| | |||||| ||||||||| ||||||||    
T  202903 attagcattgccacgtgtcaaaatttgattggggtaatggcacaatggcact 202852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 328 - 470
Target Start/End: Original strand, 11673416 - 11673559
Alignment:
Q  328 taagttgtagttaaacatatgatcaat--gttcaagcatgacttttatctacatacaaatagac-tttatccatggataatgcataattgacagcaaaat 424  Q
    ||||||||||||||| |||||| ||||  |||||| ||||||||||| ||| | |  | ||||| ||||   ||||||||||||||||||||||||||||    
T  11673416 taagttgtagttaaatatatga-caattggttcaaacatgacttttacctatagattagtagacatttacttatggataatgcataattgacagcaaaat 11673514  T
Q  425 tgttgtttttcagactttcatctacggaaaaaggatatttagtgac 470  Q
    || ||| ||||| ||||| | |||  |||||| || ||||||||||    
T  11673515 tgatgtctttca-acttttacctatagaaaaatgacatttagtgac 11673559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 203397 - 203463
Alignment:
Q  133 acgagtggtggtgcctatgcggttgaagaaaaccagagaaggggggagactgtgtttgtgtgcatca 199  Q
    ||||||||||||||| ||| ||||||||||||   | |||||||  |||||||||||| ||||||||    
T  203397 acgagtggtggtgccgatggggttgaagaaaattggcgaaggggaaagactgtgtttgagtgcatca 203463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 6e-73; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 515 - 701
Target Start/End: Original strand, 36087414 - 36087615
Alignment:
Q  515 aaaattttgagtcccctatatttgaggccctgtgtcaaaggccttgttgcacttgcacaatgccggccttgagagtcatacaagttacgaaagcccattt 614  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36087414 aaaattttgagtcccctatatttgaggccctctgtcaaaggccttgttgcacttgcacgatgccggccttgagagtcatacaagttacgaaagcccattt 36087513  T
Q  615 caccatgagacttactaattgaaaatgggcaattctat---------------atatagcgaatttgtcaagaatagctgaatactattaaatatcttcc 699  Q
    ||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||| ||||||||||||||||||||    
T  36087514 caccatgagacttactaattgaaaatgggcaattctatatatagcgatgacaaatatagcgaatttgtcaagaatagctaaatactattaaatatcttcc 36087613  T
Q  700 ac 701  Q
    ||    
T  36087614 ac 36087615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 325 - 491
Target Start/End: Original strand, 36087229 - 36087395
Alignment:
Q  325 ctataagttgtagttaaacatatgatcaatgttcaagcatgacttttatctacatacaaatagactttatccatggataatgcataattgacagcaaaat 424  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||    
T  36087229 ctataagttgtagttaaacatatgagcaatgttcaagcatgacttttatctacatacaaatagactttatccatagataatgcataatcgacaacaaaat 36087328  T
Q  425 tgttgtttttcagactttcatctacggaaaaaggatatttagtgacggatattcatcgtaggtacaa 491  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||    
T  36087329 tgttgtctttcagactttcacctacggaaaaaggacatttagtgacagatattcatcgtaggtacaa 36087395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 4928761 - 4928697
Alignment:
Q  363 atgacttttatctacatacaaatagactttatccatggataatgcataattgacagcaaaattgt 427  Q
    ||||||||||  |||| |||||||||| ||||| || || |||||||||||||||||||||||||    
T  4928761 atgacttttacttacaaacaaatagacattatctatagacaatgcataattgacagcaaaattgt 4928697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 474
Target Start/End: Original strand, 32007912 - 32008033
Alignment:
Q  355 gttcaagcatgacttttatctacatacaaataga-ctttatccatggataatgcataattgacagcaaaattgttgtttttcagactttcatcta-cgga 452  Q
    |||||| ||||||||||| ||||  | ||||||| |||||   ||||| ||| |||||||||||||||||||| |||||| || ||||| | |||  |||    
T  32007912 gttcaaacatgacttttacctacggataaatagatctttacttatggacaattcataattgacagcaaaattgatgttttccaaacttttacctagggga 32008011  T
Q  453 aaaaggatatttagtgacggat 474  Q
    |||| || ||||||||| ||||    
T  32008012 aaaatgacatttagtgatggat 32008033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 22681487 - 22681558
Alignment:
Q  253 attagcattgccacgtgtcaaaatctaattgggttaatggcaccatggcactatggcactgaagtgcttccc 324  Q
    |||||||||||||||||||||||||| ||| ||  |||||||||||||||||||||||||||||||||||||    
T  22681487 attagcattgccacgtgtcaaaatctgatttgggcaatggcaccatggcactatggcactgaagtgcttccc 22681558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 328 - 426
Target Start/End: Original strand, 10385331 - 10385431
Alignment:
Q  328 taagttgtagttaaacatatgatcaatg-ttcaagcatgacttttatctacatacaaataga-ctttatccatggataatgcataattgacagcaaaatt 425  Q
    ||||||||||||||| |||| |  |||| ||||| ||||||||||| ||||  ||||||||| |||||   ||||| ||| ||||||||||| |||||||    
T  10385331 taagttgtagttaaatatataaataatggttcaaacatgacttttacctacggacaaatagacctttacttatggacaattcataattgacaacaaaatt 10385430  T
Q  426 g 426  Q
    |    
T  10385431 g 10385431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 401 - 470
Target Start/End: Complemental strand, 36855305 - 36855236
Alignment:
Q  401 ataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggatatttagtgac 470  Q
    |||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||| ||||||||||    
T  36855305 ataatgcataattgacagcaaaattgctgtctttcagacttttacctacggaaaaaggacatttagtgac 36855236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 365 - 456
Target Start/End: Original strand, 10240684 - 10240776
Alignment:
Q  365 gacttttatctacatacaaatagac-tttatccatggataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaa 456  Q
    |||||||| | ||||||||||||   |||| || ||||||||||||||||||||||||||||| ||| ||||||||||| || || |||||||    
T  10240684 gacttttacccacatacaaataggtatttacccctggataatgcataattgacagcaaaattgctgtctttcagacttttatgtatggaaaaa 10240776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 328 - 426
Target Start/End: Complemental strand, 14570380 - 14570280
Alignment:
Q  328 taagttgtagttaaacatatgatcaatg-ttcaagcatgacttttatctacatacaaatagac-tttatccatggataatgcataattgacagcaaaatt 425  Q
    |||||||||||| || |||||| ||||| ||||| ||| ||||||| ||||||| |||||||| ||||  |||| |||||||||||||||||| ||||||    
T  14570380 taagttgtagttcaatatatgagcaatgattcaaacataacttttacctacataaaaatagacatttactcatgaataatgcataattgacagtaaaatt 14570281  T
Q  426 g 426  Q
    |    
T  14570280 g 14570280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 344 - 471
Target Start/End: Complemental strand, 5069229 - 5069100
Alignment:
Q  344 atatgatcaatg-ttcaagcatgacttttatctacatacaaatagac-tttatccatggataatgcataattgacagcaaaattgttgtttttcagactt 441  Q
    |||||| ||||| ||||| |||||||||||  |||| ||||||| || |||||||||| | ||||||||||||||| ||||||||| || ||||| ||||    
T  5069229 atatgaacaatgattcaaacatgacttttacatacaaacaaataaacatttatccatgaacaatgcataattgacaacaaaattgtagtctttcaaactt 5069130  T
Q  442 tcatctacggaaaaaggatatttagtgacg 471  Q
    | |  |||| ||||  |||||||| |||||    
T  5069129 ttacttacgaaaaattgatatttaatgacg 5069100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 3068100 - 3068042
Alignment:
Q  328 taagttgtagttaaacatatgatcaatg-ttcaagcatgacttttatctacatacaaat 385  Q
    ||||||||||||||| |||||| ||||| |||||| |||||||||| ||||||| ||||    
T  3068100 taagttgtagttaaatatatgagcaatgattcaagtatgacttttacctacataaaaat 3068042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 4681 - 4629
Alignment:
Q  41 tgacaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggc 93  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4681 tgacaaattgatgttcgacggtgcggcggagggcggtggttgcaggtcatggc 4629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 4449 - 4398
Alignment:
Q  253 attagcattgccacgtgtcaaaatctaattgggttaatggcaccatggcact 304  Q
    |||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  4449 attagcattgccacgtgtcaaaatctgattggggcaatggcaccatggcact 4398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 32327347 - 32327267
Alignment:
Q  43 acaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaacgagtggtggtg 123  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||   | ||||||||||| ||||| ||||    
T  32327347 acaaattgatgttcgacggtgcggcggagggcggtggttgcaggtcatggcagcagccagcgaagaaaaccagtggcggtg 32327267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 328 - 456
Target Start/End: Complemental strand, 41643283 - 41643153
Alignment:
Q  328 taagttgtagttaaacatatgatcaat-gttcaagcatgacttttatctacatacaaatagac-tttatccatggataatgcataattgacagcaaaatt 425  Q
    ||||||||||||||| |||||| |||| ||| || ||||||||||| ||||||||||| |||| ||||   ||||  ||||||||||||| ||||||||     
T  41643283 taagttgtagttaaatatatgagcaatagtttaaacatgacttttacctacatacaaagagacatttacatatgggcaatgcataattgatagcaaaata 41643184  T
Q  426 gttgtttttcagactttcatctacggaaaaa 456  Q
    ||||| ||| | ||||| | ||||| |||||    
T  41643183 gttgtctttaaaacttttacctacgaaaaaa 41643153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 25864317 - 25864402
Alignment:
Q  37 cctgtgacaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaacgagtggtggt 122  Q
    ||||||| |||||||||| | |||||||||||||||||||||||||  ||| | ||||||   ||||||||||||| | |||||||    
T  25864317 cctgtgataaattgatgtacaacagtgcggcggagggcggtggttgatggttacggcggcagacggcgaagaaaaccaatggtggt 25864402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 32327076 - 32327040
Alignment:
Q  288 aatggcaccatggcactatggcactgaagtgcttccc 324  Q
    |||||||||||| ||||||||||||||||||||||||    
T  32327076 aatggcaccatgacactatggcactgaagtgcttccc 32327040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 442
Target Start/End: Complemental strand, 7888492 - 7888408
Alignment:
Q  355 gttcaagcatgacttttatctacatacaaatagac-tttatccatggataatgcataattgacagcaaaattgttgtttttcagacttt 442  Q
    |||||| ||| || |||||||||| |||||||||| |||||| |||||    ||||||||||||| |||||| |||| |||||||||||    
T  7888492 gttcaaacataacatttatctacagacaaatagacatttatctatgga----gcataattgacagtaaaattattgtctttcagacttt 7888408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 392
Target Start/End: Original strand, 11539082 - 11539147
Alignment:
Q  328 taagttgtagttaaacatatgatcaatg-ttcaagcatgacttttatctacatacaaatagacttt 392  Q
    |||||| |||||||| |||||| || || ||||| |||||||||||| |||| |||||||||||||    
T  11539082 taagttatagttaaatatatgagcattggttcaaacatgacttttatatacaaacaaatagacttt 11539147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 328 - 426
Target Start/End: Complemental strand, 7504054 - 7503954
Alignment:
Q  328 taagttgtagttaaacatatgatcaatg-ttcaagcatgacttttatctacatacaaatagac-tttatccatggataatgcataattgacagcaaaatt 425  Q
    ||||||||||||||| |||||| ||||| ||||| ||||| ||||| ||||| | ||||| || ||||   | |||||||||||||||||| | ||||||    
T  7504054 taagttgtagttaaatatatgagcaatggttcaaacatgatttttacctacagataaataaacatttacttaaggataatgcataattgacggtaaaatt 7503955  T
Q  426 g 426  Q
    |    
T  7503954 g 7503954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 359 - 430
Target Start/End: Complemental strand, 20684217 - 20684145
Alignment:
Q  359 aagcatgacttttatctacatacaaatagac-tttatccatggataatgcataattgacagcaaaattgttgt 430  Q
    |||||||| ||||||||||| | |||||||| |||| | ||| | |||||||||||| ||| |||||||||||    
T  20684217 aagcatgatttttatctacagataaatagacatttacctatgaacaatgcataattggcagtaaaattgttgt 20684145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 49180 - 49254
Alignment:
Q  253 attagcattgccacgtgtcaaaatctaattgggttaatggcaccatggcactatggcactgaagtgcttccccta 327  Q
    |||||||||||||| || |||||||| ||||||  |||||||||||| || ||||||||||||||||||||||||    
T  49180 attagcattgccacatggcaaaatctgattggggcaatggcaccatgacattatggcactgaagtgcttccccta 49254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 48491 - 48440
Alignment:
Q  253 attagcattgccacgtgtcaaaatctaattgggttaatggcaccatggcact 304  Q
    |||||||||||||||||||||||||| ||| ||  |||||||||||||||||    
T  48491 attagcattgccacgtgtcaaaatctgattagggcaatggcaccatggcact 48440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 48577684 - 48577759
Alignment:
Q  37 cctgtgacaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaac 112  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||| || | |||||||||  || ||||||||||    
T  48577684 cctgtgataaattgatgttcaacagtgcggcggagggcggtggttgaagcttatggcggcggacgacgaagaaaac 48577759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 328 - 417
Target Start/End: Original strand, 31446971 - 31447062
Alignment:
Q  328 taagttgtagttaaacatatgatcaatg-ttcaagcatgacttttatctacatacaaatagac-tttatccatggataatgcataattgaca 417  Q
    ||||||||||||||| ||||||  |||| |||||  ||||||||||  |||| |||||||||| ||||| |||||| |||||||||||||||    
T  31446971 taagttgtagttaaatatatgaataatgattcaaatatgacttttacttacacacaaatagacatttattcatggacaatgcataattgaca 31447062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 442
Target Start/End: Original strand, 31078474 - 31078549
Alignment:
Q  368 ttttatctacatacaaatagactttatcc-atggataatgcataattgacagcaaaattgttgtttttcagacttt 442  Q
    ||||| ||||| |||||||||| || ||| ||| | ||||||||||||||| |||||||||||| || ||||||||    
T  31078474 ttttacctacaaacaaatagacattttcctatgaacaatgcataattgacaacaaaattgttgtcttccagacttt 31078549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 2916196 - 2916258
Alignment:
Q  328 taagttgtagttaaacatatgatcaatg-ttcaagcatgacttttatctacatacaaatagac 389  Q
    ||||||||||||||| ||||||  | || ||||| ||||||||||||||||| ||||||||||    
T  2916196 taagttgtagttaaatatatgagaattggttcaaacatgacttttatctacagacaaatagac 2916258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 475
Target Start/End: Original strand, 35195352 - 35195422
Alignment:
Q  405 tgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggatatttagtgacggata 475  Q
    ||||||||||||| || ||||||||| ||| |||| || | |||| |||||| |||||||| |||||||||    
T  35195352 tgcataattgacatcataattgttgtattttagacatttacctacagaaaaaagatatttaatgacggata 35195422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 441
Target Start/End: Complemental strand, 18442117 - 18442037
Alignment:
Q  362 catgacttttatctacatacaaatagac-tttatccatggataatgcataattgacagcaaaattgttgtttttcagactt 441  Q
    |||| |||||| ||||||| |||||||| |||||| ||  | ||||||||||| ||| |||||||||||| ||||| ||||    
T  18442117 catggcttttacctacatataaatagacatttatctataaacaatgcataatttacaacaaaattgttgtctttcaaactt 18442037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 10463255 - 10463169
Alignment:
Q  36 acctgtgacaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaacgagtggtggt 122  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||  ||| | || ||||  |||||||||||||  ||||||||    
T  10463255 acctgtgataaattgatgtacaacagtgcggcggagggcggtggttgatggttacggtggcggacggcgaagaaaaccggtggtggt 10463169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 43732909 - 43732823
Alignment:
Q  36 acctgtgacaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaacgagtggtggt 122  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||  ||| | || ||||  |||||||||||||  ||||||||    
T  43732909 acctgtgataaattgatgtacaacagtgcggcggagggcggtggttgatggttacggtggcggacggcgaagaaaaccggtggtggt 43732823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 365 - 470
Target Start/End: Complemental strand, 8904829 - 8904724
Alignment:
Q  365 gacttttatctacatacaaatagac-tttatccatggataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggatatt 463  Q
    |||||||| | ||| |||||||||| |||| | |||||||||||||||||||| | ||||||| ||| |||  |||||| ||||||||||||| || |||    
T  8904829 gacttttacccacagacaaatagacatttacctatggataatgcataattgacggtaaaattgatgtcttt-ggacttttatctacggaaaaatgacatt 8904731  T
Q  464 tagtgac 470  Q
    || ||||    
T  8904730 taatgac 8904724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 397 - 491
Target Start/End: Complemental strand, 22572170 - 22572076
Alignment:
Q  397 atggataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggatatttagtgacggatattcatcgtaggtacaa 491  Q
    ||||||||||||||||| |||| ||||||| ||| ||| ||||||| | |||| |||||| || ||||||||| |||| || |  ||||||||||    
T  22572170 atggataatgcataattaacagtaaaattgatgtcttttagactttaacctacagaaaaatgacatttagtgatggattttaacggtaggtacaa 22572076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 469
Target Start/End: Complemental strand, 26515752 - 26515676
Alignment:
Q  392 tatccatggataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggatatttagtga 469  Q
    |||| ||||| ||||||||||||||| |||||||||||| ||||| ||||  | |||| ||||||||| |||||||||    
T  26515752 tatctatggacaatgcataattgacaacaaaattgttgtctttcaaacttctacctac-gaaaaaggacatttagtga 26515676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 328 - 430
Target Start/End: Original strand, 13017752 - 13017856
Alignment:
Q  328 taagttgtagttaaacatatgatcaatg-ttcaagcatgacttttatctacatacaaatagac-tttatccatggataatgcataattgacagcaaaatt 425  Q
    ||||||||||||||| |||| | ||| | ||||| ||  |||||||||||||  ||||||||| |||||| ||||| | ||| ||||||||| |||||||    
T  13017752 taagttgtagttaaatatataagcaacgattcaaacactacttttatctacagtcaaatagacatttatctatggacagtgcctaattgacatcaaaatt 13017851  T
Q  426 gttgt 430  Q
    |||||    
T  13017852 gttgt 13017856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 401 - 473
Target Start/End: Original strand, 27232304 - 27232376
Alignment:
Q  401 ataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggatatttagtgacgga 473  Q
    |||||||||||||||||  ||| ||||||| |||||| |||| | |||||||||||  | |||||||||||||    
T  27232304 ataatgcataattgacaataaagttgttgtctttcagtcttttacctacggaaaaaatacatttagtgacgga 27232376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 50672071 - 50672032
Alignment:
Q  37 cctgtgacaaattgatgttcgacagtgcggcggagggcgg 76  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  50672071 cctgtgataaattgatgttcaacagtgcggcggagggcgg 50672032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 5913238 - 5913322
Alignment:
Q  37 cctgtgacaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaacgagtggtgg 121  Q
    ||||||| |||||||||||| |||||| || |||||| ||||||||  ||| |||||||||  |||||||||||||  |||||||    
T  5913238 cctgtgataaattgatgttcaacagtgtggtggagggtggtggttgatggttatggcggcggacggcgaagaaaaccggtggtgg 5913322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 363 - 474
Target Start/End: Complemental strand, 3519415 - 3519303
Alignment:
Q  363 atgacttttatctacatacaaatagac-tttatccatggataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggata 461  Q
    |||||||||| ||||||| |||||||| ||||   ||||| ||| ||||||||| |||||||||| |||  | || ||||| | |||| |||||| || |    
T  3519415 atgacttttacctacatataaatagacatttacttatggacaattcataattgatagcaaaattgctgtcatccaaacttttacctaccgaaaaatgaca 3519316  T
Q  462 tttagtgacggat 474  Q
    |||||||||||||    
T  3519315 tttagtgacggat 3519303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 332 - 474
Target Start/End: Complemental strand, 6056753 - 6056609
Alignment:
Q  332 ttgtagttaaacatatgatcaat-gttcaagcatgacttttatctacatacaaatagac-tttatccatggataatgcataattgacagcaaaattgttg 429  Q
    ||||||||||| |||| | |||| | |||| ||||||||||| ||||| | |||||||| ||||   ||||| ||| ||||||| |||  ||||||||||    
T  6056753 ttgtagttaaatatataagcaattgctcaaacatgacttttacctacaaataaatagacatttacttatggacaattcataattaacaataaaattgttg 6056654  T
Q  430 tttttcagactttcatctacggaaaaaggatatttagtgacggat 474  Q
    | || || ||||| | ||||| ||||| || ||||||||||||||    
T  6056653 tcttccaaacttttacctacgaaaaaatgacatttagtgacggat 6056609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 470
Target Start/End: Original strand, 5323841 - 5323949
Alignment:
Q  362 catgacttttatctacatacaaatagac-tttatccatggataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggat 460  Q
    ||||||||||| |||||| || |||||| |||| | |  || ||||||||||| |||| ||||||||| | ||||||||||| | |||| || ||| |||    
T  5323841 catgacttttacctacatgcatatagacatttacctactgacaatgcataattaacagtaaaattgttatctttcagacttttacctac-gataaatgat 5323939  T
Q  461 atttagtgac 470  Q
    ||||||||||    
T  5323940 atttagtgac 5323949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University