View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16903_low_2 (Length: 366)
Name: NF16903_low_2
Description: NF16903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16903_low_2 |
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| [»] scaffold0477 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 5 - 357
Target Start/End: Original strand, 9717 - 10068
Alignment:
| Q |
5 |
ggacatcatcattatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctc |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9717 |
ggacataatcattatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctc |
9816 |
T |
|
| Q |
105 |
tttccgcacccttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaattta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9817 |
tttccgcacccttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaattta |
9916 |
T |
|
| Q |
205 |
tttctgttttctgtaatnnnnnnnntagtggaataaagtgggcaaggaataacaattttcctatacccacccacggtctatacatgaatggggggaaatc |
304 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9917 |
tttctgttttctgtaataaaaaaaatcgtggaataaagtgggcaaggaataacaaatttcctatacccacccac-gtctatacatgaatggggggaaatc |
10015 |
T |
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| Q |
305 |
ctcggatcaaaattattcttattttaattaggtttaagtctgacgagaataat |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10016 |
ctcggatcaaaattattcttattttaattaggtttaagtctgacgagaataat |
10068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 5 - 357
Target Start/End: Original strand, 18180712 - 18181063
Alignment:
| Q |
5 |
ggacatcatcattatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctc |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180712 |
ggacataatcattatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctc |
18180811 |
T |
|
| Q |
105 |
tttccgcacccttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaattta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180812 |
tttccgcacccttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaattta |
18180911 |
T |
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| Q |
205 |
tttctgttttctgtaatnnnnnnnntagtggaataaagtgggcaaggaataacaattttcctatacccacccacggtctatacatgaatggggggaaatc |
304 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18180912 |
tttctgttttctgtaataaaaaaaatcgtggaataaagtgggcaaggaataacaaatttcctatacccacccac-gtctatacatgaatggggggaaatc |
18181010 |
T |
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| Q |
305 |
ctcggatcaaaattattcttattttaattaggtttaagtctgacgagaataat |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18181011 |
ctcggatcaaaattattcttattttaattaggtttaagtctgacgagaataat |
18181063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 254
Target Start/End: Original strand, 37189370 - 37189616
Alignment:
| Q |
5 |
ggacatcatcattatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctc |
104 |
Q |
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|
|||||| |||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37189370 |
ggacataatcattatgtaggagagatggccgagtggttgaaggtgcagtactggaactgctatgtaggctttttgtttaccgagggttcgaa---ctctc |
37189466 |
T |
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| Q |
105 |
tttccgcacccttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaattta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37189467 |
tttccgcacccttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtgaattctctattcctaattta |
37189566 |
T |
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| Q |
205 |
tttctgttttctgtaatnnnnnnnntagtggaataaagtgggcaaggaat |
254 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37189567 |
tttctgttttctgtaataaaaaaaatagtggaataaagtgggcaaggaat |
37189616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 244818 - 244912
Alignment:
| Q |
16 |
ttatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccg |
110 |
Q |
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|||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244818 |
ttatgtaggaaagatggccgagcggttcaaggcgtagcattggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccg |
244912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 117
Target Start/End: Complemental strand, 207817 - 207782
Alignment:
| Q |
82 |
taccgagggttcgaatccctctctttccgcaccctt |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
207817 |
taccgagggttcgaatccctctctttccgctccctt |
207782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 27029873 - 27029783
Alignment:
| Q |
12 |
atcattatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggc----tttttgtttaccgagggttcgaatc |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| |
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| T |
27029873 |
atcattatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaagctttttttttttttaccgagggttcgaatc |
27029783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 42818 - 42790
Alignment:
| Q |
82 |
taccgagggttcgaatccctctctttccg |
110 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42818 |
taccgagggttcgaatccctctctttccg |
42790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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