View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16903_low_3 (Length: 225)
Name: NF16903_low_3
Description: NF16903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16903_low_3 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 13715859 - 13716051
Alignment:
| Q |
19 |
aaagtaggatatttacggctaatgtatgagggaatctgccattgttggtgcacaatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtag |
118 |
Q |
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| T |
13715859 |
aaagtaggatatttagggctaatgtatgagggaatctgccattgttggtgcacgatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtag |
13715958 |
T |
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| Q |
119 |
gaatgcttagagactgcaccaatggctcaccgggccacatgtccttccaaaagagaacattctccacattccctatgttccaattagaattat |
211 |
Q |
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| T |
13715959 |
gaatgcttagagacttcaccaatggctcaccgggccacatgtgcttccaaaagagaacattctccacattccctatgttccaattagaattat |
13716051 |
T |
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Target: scaffold0118 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 36130 - 36318
Alignment:
| Q |
22 |
gtaggatatttacggctaatgtatgagggaatctgccattgttggtgcacaatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaa |
121 |
Q |
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|||||||||||| |||||||| | ||||||| ||||||| ||||||| |||||||| |||||||||||||| ||||| |||||| ||||| | ||||| |
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| T |
36130 |
gtaggatatttagaactaatgtaggtgggaatccgccattgatggtgcagaatgtaatctgacaccttcatgtccagctgagcatgaaaatgtgaaggaa |
36229 |
T |
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| Q |
122 |
tgcttagagactgcaccaatggctcaccgggccacatgtccttccaaaagagaacattctccacattccctatgttccaattagaatta |
210 |
Q |
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| T |
36230 |
tgctgagagactgcaccaacggctcacccaaccacctgtccttccaaaagagaacattctccccattcccaatattccaagtagaatta |
36318 |
T |
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