View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_1 (Length: 816)
Name: NF16904_high_1
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 302 - 807
Target Start/End: Original strand, 4614737 - 4615248
Alignment:
| Q |
302 |
gaagaaagggcaaaaacgtcatttgacgatataatcgaagagttacactattatataatcgtaaattgaaatgaaatagataaagttataaaacctagag |
401 |
Q |
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| T |
4614737 |
gaagaaagggcaaaaacgtcatttgacgatataatcgaagagttacactattatataatcgtaaattgaaatgaaatagataaagttataaaacctagag |
4614836 |
T |
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| Q |
402 |
------agagttagttaagcgttaagaatgggtttactgtggtggcggaaggggaagaattcacaacctgaagcgaagttgtcgacgacggagaacgcgg |
495 |
Q |
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| T |
4614837 |
aaagagagagttagttaagcgttaaggatgggtttactgtggtggcggaaggggaagaattcacaacctgaagcgaagttgtcgacgacggagaacgcgg |
4614936 |
T |
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| Q |
496 |
cgaagaatggtggtgcctcggcggtgaaaccaactacggaggcgccagggatgaacggtgcagtggaggttaaacgacctaagaacgcgagtgtttcagt |
595 |
Q |
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| T |
4614937 |
cgaagaatggtggtgcctcggcggtgaaaccaactacggaggcgccagggatgaacggtgcagtggaggttaaacgacctaagaacgcgagtgtttcagt |
4615036 |
T |
|
| Q |
596 |
tttcgagtttggttcggttgctgcgagcaacgataaggttactcttgccggttattgtccagtttctgaagatcttgagccttgccgttgggagatccta |
695 |
Q |
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| T |
4615037 |
tttcgagtttggttcggttgctgcgagcaacgataaggttactcttgccggttattgtccagtttctgaagatcttgagccttgccgttgggagatccta |
4615136 |
T |
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| Q |
696 |
ccggcggttgagtcaaacgcgccgcagtttcgcgttgttttctgatatctcatgttatgtgtattcttgtttagttttgcgaactatttatttgaaccca |
795 |
Q |
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| T |
4615137 |
ccggcggttgagtcaaacgcgccgcagtttcgcgttgttttctgatatctcatgttatgtgtattcttgtttagttttgcgaactatttatttgaaccga |
4615236 |
T |
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| Q |
796 |
aattgatgatgt |
807 |
Q |
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| T |
4615237 |
aattgatgatgt |
4615248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 63 - 272
Target Start/End: Original strand, 4614495 - 4614704
Alignment:
| Q |
63 |
aaactcaaccgtattaacagcaataacagaatcagacaacgaaaacgacatcgttttgttagttggaatatacaaaagtgaaattgcgaagaaccttgtg |
162 |
Q |
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| T |
4614495 |
aaactcaaccgtattaacagcaataacagaatcagacaacgaaaacgacatcgttttgttagttggaatatacaaaagtgaaattgcgaagaaccttgtg |
4614594 |
T |
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| Q |
163 |
agagtaagaagcgagaagaagattctagaagcagagatttttgttcttcattcatggcttcaacacacaaacacagattcagatttactgaaacaatgtg |
262 |
Q |
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| T |
4614595 |
agagtaagaagcgagaagaagattctagaagcagagatttttgttcttcattcatggcttcaacacacaaacacagattcagatttactgaaacaatgtg |
4614694 |
T |
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| Q |
263 |
taagattatg |
272 |
Q |
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| T |
4614695 |
taagattatg |
4614704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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