View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_12 (Length: 557)
Name: NF16904_high_12
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Original strand, 8577028 - 8577564
Alignment:
| Q |
1 |
ggtaaaattaacccgaccctcaaattttttgatatatattttctcttcactnnnnnnncattttattggattgactgaattatcaggatcaagaaattga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8577028 |
ggtaaaattaacccgaccctcaaattttttgatatatattttctcttcgctaaaaaaacattttattggattgactgaattatcaggatcaagaaattga |
8577127 |
T |
|
| Q |
101 |
tataaataattaaattattccctnnnnnnnnnnnntatattgtaagattacaagaataaaaaagtaaattaagtttaaaatctcatccttcattttgtgg |
200 |
Q |
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| T |
8577128 |
tataaataattaaattattccctaaaaaaaaaaa--atattgtaagattacaagaataaaaaagtaaattaagtttaaaatctcatccttcattttgtgg |
8577225 |
T |
|
| Q |
201 |
actaaacaatatttttaattaaaaaatttatcctctcttcctttcccctcccttttcgatcccttgttaatttctcagccctgtttgtactttaccaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8577226 |
actaaacaatatttttaattaaaaaatttatcctctcttcctttcccctcccttttcgatcccttgttaatttctcagccctgtttgtactttaccaaaa |
8577325 |
T |
|
| Q |
301 |
aaccctaagcaaaataagaaaataatggtatgcagaaacgtgaaaagtgtaagagagagaggtttgaggaaacacaaaaatgtgatggttagagagactg |
400 |
Q |
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| T |
8577326 |
aaccctaagcaaaataagaaaataatggtatgcagaaacgtgaagagtgtaagagagagaggtttgaggaaacacaaaaatgtgatggttagagagactg |
8577425 |
T |
|
| Q |
401 |
agagaattattcaccaaacaaaaagtatgttgagaggattgaaggagatgcacatgttaatgttaatggtgaggttatgaaaggaatgatattatatgga |
500 |
Q |
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| T |
8577426 |
agagaattattcaccaaacaaaaagtatgttgagaggattgaaggagatgcacatgttaatgttaatggtgaggttatgaaaggaatcatattatatgga |
8577525 |
T |
|
| Q |
501 |
ttgaagaaaatgatggtagctggaatgatctctccaaaa |
539 |
Q |
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| T |
8577526 |
ttgaagaaaatgatggtagctggaatgatctctccaaaa |
8577564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 8597905 - 8597490
Alignment:
| Q |
1 |
ggtaaaattaacccgaccctcaaattttttgatatatattttctcttcactnnnnnnncattttattggattgactgaattatcaggatcaagaaattga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| |||||| ||| |
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| T |
8597905 |
ggtaaaattaacccgaccctcaaattttttgatatatattttctcttccctaaaaaaacattttattgggttgactgaattatcaggatgaagaaactga |
8597806 |
T |
|
| Q |
101 |
tataaataattaaattattccctnnnnnnnnnnnntatattgtaagattacaagaataaaaaa-gtaaattaagtttaaaatctcatccttcattttgtg |
199 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || |
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| T |
8597805 |
tataaataattaaattattccctaaaaaaaattaaattattgtaagattacaagaataaaaaaagtaaattaagtttaaaatctcatccttccctttctg |
8597706 |
T |
|
| Q |
200 |
gactaaacaatatttttaattaaaaaa-tttatcc-tctcttc----ctttcccctcccttttcgatcccttgttaatttctcagccctgtttgtacttt |
293 |
Q |
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| T |
8597705 |
gactaaa-aatattt--aattaaaaaaatttatcaatctcatctcttctttcccctcccttttcgatccctttttaaattctcagccctgtttgtac--- |
8597612 |
T |
|
| Q |
294 |
accaaaaaaccctaagcaaaataagaaaataatggtatgcagaaacgtgaaaagtgtaagagagagaggtttgaggaaacacaaaaatgtgatggttaga |
393 |
Q |
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| T |
8597611 |
-caaaaaaaccctaagcaaaataagaaaataatggtatgcagaaacgtgaaaagtgtaagagagagaggtttgaggaaacacaaaaatgtgatggtta-- |
8597515 |
T |
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| Q |
394 |
gagactgagagaattattcaccaaa |
418 |
Q |
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||||||||||||||||||||||||| |
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| T |
8597514 |
gagactgagagaattattcaccaaa |
8597490 |
T |
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