View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_13 (Length: 540)
Name: NF16904_high_13
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 10 - 524
Target Start/End: Complemental strand, 21740720 - 21740202
Alignment:
| Q |
10 |
aagaatatcataatgaactgagcagtaaactagtgatgattacaatgccatcaaacttttatgaagactagctagcatccatgaaaaagggcaagtgcct |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21740720 |
aagaatatcataatgaactgagcagtaaactagtgatgattacaatgccatcaaacttttatgaagactagctagcatccatgaaaaagggcaagtgcct |
21740621 |
T |
|
| Q |
110 |
aaaacaatcacaaacatgcatgaannnnnnnnnnnnnnnnnnnnnnnnttcgcaaatttgcaagtaaaaatttgaagttggtgaagggagttcaaaatat |
209 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21740620 |
aaaacaatcacaaacatgcatgaagtgtgcgtgtgcgtgtgtgtctgtttcgcaaatttgcaagtaaaaatttgaagttggtgaagggagttcaaaatat |
21740521 |
T |
|
| Q |
210 |
acacaacacagataaaatgataaaatcttccaggttaaaatatataatccctaacctgaatttatctgctagagccggatagaacatcaaacaggccaca |
309 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21740520 |
acacaacacagataaaatgataaaattttccaggttaaaatatataatccctaacctgaatttatctgctagagccggatagaacatcaaacaggccaca |
21740421 |
T |
|
| Q |
310 |
gcaactcaaccaggacgtcttatgcaccataagcggagctaccgggggctgcttgtcaataattcagag-nnnnnnnngcttataaaattagttatcaac |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
21740420 |
gcaactcaaccaggacgtcttatgcaccataagcggagctaccgggggctgcatgtcaataattcagagagaaaaaaagcttataaaattagttatcaac |
21740321 |
T |
|
| Q |
409 |
acaagttcagacactaaaagtatctaatgaaaatcacactcactaacaacttcaggatt-tattaactaatttaag--atatatatagcgtgtcagtgtg |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||| |
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| T |
21740320 |
acaagttcagacactaaaagtatctaatgaaaatcacactcactaacaacttcaggattatattaactaatttaagatatatatatagcgtatcagtgtg |
21740221 |
T |
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| Q |
506 |
tgtgcatgcgtgtgtgtct |
524 |
Q |
| |
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||||||||||||||||||| |
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| T |
21740220 |
tgtgcatgcgtgtgtgtct |
21740202 |
T |
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