View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_20 (Length: 485)
Name: NF16904_high_20
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 1516047 - 1516518
Alignment:
| Q |
1 |
tgatgatgatgatcctgcagccatacgtgtatgagaccttctattcaactcaaccatttgttccatcaacctacttcttctcaaacccaaactcaactca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516047 |
tgatgatgatgatcctgcagccatacgtgtatgagaccttctattcaactcaaccatttgttccatcaacctacttcttctcaaacccaaactcaactca |
1516146 |
T |
|
| Q |
101 |
aagtcatattcttctttaagctttggatttgacaaagtctcataagctgcattgagttgtacaaacatcttcgttgattcctctttcttcaaacgatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516147 |
aagtcatattcttctttaagctttggatttgacaaagtctcataagctgcattgagttgtacaaacatcttcgttgattcctctttcttcaaacgatcat |
1516246 |
T |
|
| Q |
201 |
gacaaaaatcaggatgatactggagagccattgttctatatgctctctttatgtcatccattgttgcacttttaggactcaaacatagtatcttgtacaa |
300 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516247 |
gacaaacatcaggatgatactggagagccattgttctatatgctctctttatgtcatccattgttgcacttttaggactcaaacatagtatcttgtacaa |
1516346 |
T |
|
| Q |
301 |
gttgccatcatcattcagctcaggttgaattggaacatttttgttagctctgcatgaaacaaaaaactgcatacgaggttgtctacttgagagtggaagg |
400 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1516347 |
gttgccatcatcattcaactcattatgaattggaacattttttgtagctctgcatgaaacagaaaactgcatacgaggttgtctacttgagagtggaagg |
1516446 |
T |
|
| Q |
401 |
atatgatgttgatatggtttggaaatgctaattaggcctgagtttaaggaggataaaacatccataattttg |
472 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1516447 |
atatgatgttgatatggtttggaaatgctaattaggcctgagtttaaggataataaaacatccataattttg |
1516518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 1530277 - 1530748
Alignment:
| Q |
1 |
tgatgatgatgatcctgcagccatacgtgtatgagaccttctattcaactcaaccatttgttccatcaacctacttcttctcaaacccaaactcaactca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530277 |
tgatgatgatgatcctgcagccatacgtgtatgagaccttctattcaactcaaccatttgttccatcaacctacttcttctcaaacccaaactcaactca |
1530376 |
T |
|
| Q |
101 |
aagtcatattcttctttaagctttggatttgacaaagtctcataagctgcattgagttgtacaaacatcttcgttgattcctctttcttcaaacgatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1530377 |
aagtcatattcttctttaagctttggatttgacaaagtctcataagctgcattgagttgtacaaacatcttcgttgattcctctttcttcaaacgatcat |
1530476 |
T |
|
| Q |
201 |
gacaaaaatcaggatgatactggagagccattgttctatatgctctctttatgtcatccattgttgcacttttaggactcaaacatagtatcttgtacaa |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530477 |
gacaaacatcaggatgatactggagagccattgttctatatgctctctttatgtcatccattgttgcacttttaggactcaaacatagtatcttgtacaa |
1530576 |
T |
|
| Q |
301 |
gttgccatcatcattcagctcaggttgaattggaacatttttgttagctctgcatgaaacaaaaaactgcatacgaggttgtctacttgagagtggaagg |
400 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1530577 |
gttgccatcatcattcaactcattatgaattggaacattttttgtagctctgcatgaaacagaaaactgcatacgaggttgtctacttgagagtggaagg |
1530676 |
T |
|
| Q |
401 |
atatgatgttgatatggtttggaaatgctaattaggcctgagtttaaggaggataaaacatccataattttg |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1530677 |
atatgatgttgatatggtttggaaatgctaattaggcctgagtttaaggataataaaacatccataattttg |
1530748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 465
Target Start/End: Original strand, 1498699 - 1498778
Alignment:
| Q |
387 |
ttgagagtggaaggatatgatgttgatatggtttggaaa-tgctaattaggcctgagtttaaggaggataaaacatccat |
465 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||||||||||| || |||| | || ||| |||||||| ||||||||||||| |
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|
| T |
1498699 |
ttgaaagtgaaaggatatgatgtggatatggtttggaaattggtaatgaagcttgaatttaaggataataaaacatccat |
1498778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 125 - 273
Target Start/End: Complemental strand, 37593131 - 37592983
Alignment:
| Q |
125 |
ggatttgacaaagtctcataagctgcattgagttgtacaaacatcttcgttgattcctctttcttcaaacgatcatgacaaaaatcaggatgatactgga |
224 |
Q |
| |
|
||||| |||||||| |||||||||||||| | | ||||| || || ||||||||||||||| | || |||||||||| | ||||||||||||||| | |
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|
| T |
37593131 |
ggattcgacaaagtttcataagctgcatttaaccgaacaaatattttagttgattcctctttcatggaaggatcatgacacacatcaggatgatactgaa |
37593032 |
T |
|
| Q |
225 |
gagccattgttctatatgctctctttatgtcatccattgttgcactttt |
273 |
Q |
| |
|
| ||||||| |||||| ||||||||||| || ||||||||||||||||| |
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| T |
37593031 |
gtgccattgatctataagctctctttatatcttccattgttgcactttt |
37592983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 387 - 471
Target Start/End: Complemental strand, 16553268 - 16553184
Alignment:
| Q |
387 |
ttgagagtggaaggatatgatgttgatatggtttggaaatgctaattaggcctgagtttaaggaggataaaacatccataatttt |
471 |
Q |
| |
|
|||||||||||| ||||||| || |||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |
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|
| T |
16553268 |
ttgagagtggaatgatatgacgtggatatggtttggaaatgctaattatgcctgagtttaaggatgataaaacatatataatttt |
16553184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 195 - 283
Target Start/End: Complemental strand, 7978454 - 7978366
Alignment:
| Q |
195 |
gatcatgacaaaaatcaggatgatactggagagccattgttctatatgctctctttatgtcatccattgttgcacttttaggactcaaa |
283 |
Q |
| |
|
||||| |||| |||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |||| ||||||||||| |
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|
| T |
7978454 |
gatcacgacacaaatcaggatgatactaaagagccattgttctatattctctctttatgtcattcattgttgaacttctaggactcaaa |
7978366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 462
Target Start/End: Complemental strand, 7978307 - 7978165
Alignment:
| Q |
330 |
ttggaacatttttgt-tagctctgcatgaaacaaaaaactgcatacgaggttgtct---------acttgagagtggaaggatatgatgttgatatggtt |
419 |
Q |
| |
|
||||||||||||| | | ||||||||||||||| || ||||||||| ||||||||| | |||| | |||||||||||||||||||||||||| |
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|
| T |
7978307 |
ttggaacatttttttatggctctgcatgaaacataacactgcatacaaggttgtctttgttgcttatttgaaattggaaggatatgatgttgatatggtt |
7978208 |
T |
|
| Q |
420 |
tggaaatgctaattaggcctgagtttaaggaggataaaacatc |
462 |
Q |
| |
|
|||||||||||| |||| ||| ||||||| |||||||||| |
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|
| T |
7978207 |
tggaaatgctaacgaggctcgaggttaaggataataaaacatc |
7978165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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