View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_21 (Length: 483)
Name: NF16904_high_21
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 23893088 - 23892624
Alignment:
| Q |
1 |
tgagatttcttcatggtgacgacaaaaacagcacacagagacaatattacaaccgcgtttacgaaggttttcatccgtgggtaacctgttatgcgctaac |
100 |
Q |
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| T |
23893088 |
tgagatttcttcatggtgacgacaaaaccagcacacagagacaatattacaaccgcgtttacgaaggttttcatccgtgggtaacctgttatgcgctaac |
23892989 |
T |
|
| Q |
101 |
ctccagaaaacaaaggacctagtgggagggagaaaagagttccaagctagcttgcactaccgtaaagctggtctagaaacacgcagagcgctgtaagcta |
200 |
Q |
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| T |
23892988 |
ctccagaaaacaaaggacctagtgggagggacaaaagagttccaagctagcttgcaccaccgtaaagctggtccagaaacacgcagagcgctgtaagtta |
23892889 |
T |
|
| Q |
201 |
tctgacaagtcagctctccatcactagaacccctccaattcaacttttcagacgtgtcttctgtagggagagtcacagtgagaatctgcctagctagact |
300 |
Q |
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| T |
23892888 |
tttgacaagtcagctctccatcactagaacccctccaattcaacttttcagacgtgtcttctgtagggagagtcacagtgagaatctgcctagctagact |
23892789 |
T |
|
| Q |
301 |
ttccttcttttgaattagataacgaggaatgttccagttcccgtccaagatgaaatcagctaccttcatgtttaggacagaatgcagatgagaagggata |
400 |
Q |
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| T |
23892788 |
ttccttcttttgaattagataacgaggaatgttccggttcccgtccaagatgaaatcggctaccttcatgtttaggacagaatgcagatgagaagggata |
23892689 |
T |
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| Q |
401 |
ctcaaagagtccacaataggtgaatccaactgcagattgcaaatcatatcttgaaaggaaatctt |
465 |
Q |
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| T |
23892688 |
ctcagagagtccacaataggtgaatccaactgcagattgcaaatcatatcttgaaaggaaatctt |
23892624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 39398064 - 39398354
Alignment:
| Q |
1 |
tgagatttcttcatggtgacgacaaaaacagcacacagagacaatattacaaccgcgtttacgaaggttttcatccgtgggtaacctgttat--gcgcta |
98 |
Q |
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|||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39398064 |
tgaggtttcttcatggtgaccacaaaaacagcacacaaagacaatattacaaccgtgtttacgaaggttttcatccgtgggtaacctgttatatgcgcta |
39398163 |
T |
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| Q |
99 |
acctccagaaaacaaaggacctagtgggagggagaaaagagttccaagctagcttgcactaccgtaaagctggtctagaaacacgcagagcgctgtaagc |
198 |
Q |
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| T |
39398164 |
acctccagaaaccaaaggacctagtgggagggacaaaagagttccaagctagcttgcaccaccgtaaagctggtccagaaacacgcagagcattgtaagc |
39398263 |
T |
|
| Q |
199 |
tatctgacaagtcagctctccatcactagaacccctccaattcaacttttcagacgtgtcttctgtagggagagtcacagtgagaatctgc |
289 |
Q |
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| T |
39398264 |
tatctgacaagtcagctctccatcactagaatccctccaattcaacttatcatatgtgtcttctgtagggaaagtcacagtgagaatctgc |
39398354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 354 - 430
Target Start/End: Original strand, 39398348 - 39398424
Alignment:
| Q |
354 |
aatcagctaccttcatgtttaggacagaatgcagatgagaagggatactcaaagagtccacaataggtgaatccaac |
430 |
Q |
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|||| ||||||||||| ||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
39398348 |
aatctgctaccttcatatttaggacataatgcagatgagaagggatacccagagagtccacaataggtgaatccaac |
39398424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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