View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_22 (Length: 465)
Name: NF16904_high_22
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 15 - 448
Target Start/End: Complemental strand, 46227100 - 46226667
Alignment:
| Q |
15 |
gacatactataagatccttaaaattgacacaagtgctaacaagcttgtaatcaaaccacccaatatatttaaacatacttgttattcttctgatctcatt |
114 |
Q |
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| T |
46227100 |
gacatactataagatccttaaaattgatacaagtgctaacaagcttgtaatcaaaccacccaatatatttaaacatacttgttattcttctgatctcatt |
46227001 |
T |
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| Q |
115 |
ggtggaggcttagtacttgatgaaagcttacccttcaatatttctaccctcaacactgtcatgcttctaaattgctctgataatatccttcaatctcctc |
214 |
Q |
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| T |
46227000 |
ggtggaggcttagtacttgatgaaagcttacccttcaatatttctaccctcaacactgtcatgcttctaaattgctctgataatatccttcaatctcctc |
46226901 |
T |
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| Q |
215 |
taaactgttcttcaaacagcatttgtagacagtttgaggaaaaagtggaggagggaaatgggtgtatgaacaccctttgttgtcattacttaaaagattc |
314 |
Q |
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| T |
46226900 |
taaactgttcttcaaacagcatttgtagacagtttgaggaaaaagtggaggagggaaatgggtgtatgaacaccctttgttgtcattacttaaaagattc |
46226801 |
T |
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| Q |
315 |
agtcatgaattctcataagatcagactcagggttgggagttgtactgcttacacttgtttggtggatttcaagcctgatgaaccttttaaaaaatggaac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46226800 |
agtcatgaattctcataagatcagactcagggttgggagttgtactgcttacacttgtttggtggatttcaagcctgatgaaccttttaaaaaatggaac |
46226701 |
T |
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| Q |
415 |
tatgggattgagttgcaatggaagcctcctaatt |
448 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
46226700 |
tatgggattgagttgcaatggaagcctcctaatt |
46226667 |
T |
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