View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16904_high_23 (Length: 458)

Name: NF16904_high_23
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16904_high_23
NF16904_high_23
[»] chr4 (12 HSPs)
chr4 (61-440)||(55664866-55665241)
chr4 (265-403)||(54861679-54861817)
chr4 (219-403)||(54627526-54627717)
chr4 (276-403)||(52985381-52985508)
chr4 (265-402)||(55658855-55658992)
chr4 (61-198)||(54627767-54627899)
chr4 (344-403)||(55635748-55635807)
chr4 (84-155)||(55636063-55636134)
chr4 (137-198)||(55635985-55636046)
chr4 (283-360)||(3671612-3671689)
chr4 (132-187)||(52985206-52985261)
chr4 (169-198)||(54861546-54861575)
[»] chr8 (2 HSPs)
chr8 (219-399)||(9890019-9890206)
chr8 (118-198)||(9890255-9890337)
[»] chr2 (2 HSPs)
chr2 (269-403)||(13401927-13402061)
chr2 (82-198)||(13402240-13402357)


Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 61 - 440
Target Start/End: Original strand, 55664866 - 55665241
Alignment:
Q  61 ctaggctaatatttatataactatcaatccagcttcaacaaccacatcctattgcactttgatgttttctcttaataaaattagacttacaaaacatacc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  55664866 ctaggctaatatttatataactatcaatccagcttcaacaaccacatcctattgcactttgatgtttactcttaataaaattagacttacaaaacatacc 55664965  T
Q  161 tatcaatgatttcaggttataatatttcaaattttaatctatagttctttacgcaataaaaagttaaatttaattagaaatatttgggtaacagctaatt 260  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  55664966 tatcaatgatttcaggttataatatttcaaattttaatttatagttctttacgcaataaaaagttaaatttaattagaaataattgggtaacagctaatt 55665065  T
Q  261 atatcaatccattatgacattacctgagtctgcatattgtctccagcaacaatatttcccaacgtgtgaagtacaggagtcaacactgaaggagatgggt 360  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55665066 atatcaatccattatgacattacctgagtctgcatattgtccccagcaacaatatttcccagcgtgtgaagtacaggagtcaacactgaaggagatgggt 55665165  T
Q  361 gccttcaaaacatgcgcatacatttagagccaaaataatcaatcaataattgaaacaaattattggtgcactggggatag 440  Q
     |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||  |||||||    
T  55665166 accttcaaaacatgcgcatacatttagagccaaaat----aatcaataattgaaacaaattattggtgcaccagggatag 55665241  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 265 - 403
Target Start/End: Original strand, 54861679 - 54861817
Alignment:
Q  265 caatccattatgacattacctgagtctgcatattgtctccagcaacaatatttcccaacgtgtgaagtacaggagtcaacactgaaggagatgggtgcct 364  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||  ||| |||  |||||| ||| |||||||||||||||||||||    
T  54861679 caatccattatgacattacctgagtctgcatattgtctccagttacaatatttcccattgtgcgaacgacaggaatcagcactgaaggagatgggtgcct 54861778  T
Q  365 tcaaaacatgcgcatacatttagagccaaaataatcaat 403  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  54861779 tcaaaacatgcacatatatttagagccaaaataatcaat 54861817  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 219 - 403
Target Start/End: Complemental strand, 54627717 - 54627526
Alignment:
Q  219 aaaagttaaatttaattagaaatatttgggtaacagctaattatatcaat-------ccattatgacattacctgagtctgcatattgtctccagcaaca 311  Q
    ||||| |||||||||||||||||| || |||| |||||||||||| ||||       ||||||||||| |||||||||||||||||  |||||||  |||    
T  54627717 aaaaggtaaatttaattagaaataattaggtagcagctaattataacaattcccaatccattatgacaatacctgagtctgcatatcatctccagataca 54627618  T
Q  312 atatttcccaacgtgtgaagtacaggagtcaacactgaaggagatgggtgccttcaaaacatgcgcatacatttagagccaaaataatcaat 403  Q
    ||||||||||  ||| ||||| |||||  || | ||||| ||||||| | |||||||||||||| |||||||||||||||||||||||||||    
T  54627617 atatttcccactgtgcgaagtgcaggaaacagcgctgaaagagatggttcccttcaaaacatgcacatacatttagagccaaaataatcaat 54627526  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 276 - 403
Target Start/End: Original strand, 52985381 - 52985508
Alignment:
Q  276 gacattacctgagtctgcatattgtctccagcaacaatatttcccaacgtgtgaagtacaggagtcaacactgaaggagatgggtgccttcaaaacatgc 375  Q
    |||||||| ||||||||||||| ||||||||  ||||||||||| |  |||  || ||||||  ||| ||||||||||||||||||||||||||||||||    
T  52985381 gacattacttgagtctgcatatcgtctccagttacaatatttccaattgtgcaaattacaggtatcagcactgaaggagatgggtgccttcaaaacatgc 52985480  T
Q  376 gcatacatttagagccaaaataatcaat 403  Q
     |||||||||||||||||||||||||||    
T  52985481 acatacatttagagccaaaataatcaat 52985508  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 265 - 402
Target Start/End: Original strand, 55658855 - 55658992
Alignment:
Q  265 caatccattatgacattacctgagtctgcatattgtctccagcaacaatatttcccaacgtgtgaagtacaggagtcaacactgaaggagatgggtgcct 364  Q
    |||||||||||||||||||||||||||||||||  ||  |    | || |||||||| ||| |||||| |||||||||||||||||||||| ||| ||||    
T  55658855 caatccattatgacattacctgagtctgcatatcatccacttttataaaatttcccaccgtttgaagtgcaggagtcaacactgaaggagacgggcgcct 55658954  T
Q  365 tcaaaacatgcgcatacatttagagccaaaataatcaa 402  Q
    ||||||||||||| || |||||||||||||||||||||    
T  55658955 tcaaaacatgcgcgtagatttagagccaaaataatcaa 55658992  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 61 - 198
Target Start/End: Complemental strand, 54627899 - 54627767
Alignment:
Q  61 ctaggctaatatttatataactatcaatccagcttcaacaaccacatcctattgcactttgatgttttctcttaataaaattagacttacaaaacatacc 160  Q
    |||||||||||||| || || | || ||| |||||||||||||||||      ||| |||| |||||||||||||| |||||||||||||||||| ||||    
T  54627899 ctaggctaatatttctaaaattctctatcaagcttcaacaaccacata-----gcattttggtgttttctcttaatcaaattagacttacaaaacttacc 54627805  T
Q  161 tatcaatgatttcaggttataatatttcaaattttaat 198  Q
     |||||| ||| |||  |||||||||||||||||||||    
T  54627804 aatcaataattacagactataatatttcaaattttaat 54627767  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 344 - 403
Target Start/End: Complemental strand, 55635807 - 55635748
Alignment:
Q  344 cactgaaggagatgggtgccttcaaaacatgcgcatacatttagagccaaaataatcaat 403  Q
    |||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||    
T  55635807 cactgaaggagatgggtgccttcaaaacattcacatacatttagaggcaaaataatcaat 55635748  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 55636134 - 55636063
Alignment:
Q  84 tcaatccagcttcaacaaccacatcctattgcactttgatgttttctcttaataaaattagacttacaaaac 155  Q
    |||||| ||||||||||||||||| |||| | | |||| ||||||||||||||||||||||| |||||||||    
T  55636134 tcaatcaagcttcaacaaccacatactatagtattttggtgttttctcttaataaaattagagttacaaaac 55636063  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 55636046 - 55635985
Alignment:
Q  137 aaaattagacttacaaaacatacctatcaatgatttcaggttataatatttcaaattttaat 198  Q
    ||||||||| ||||||||| ||||||||||| ||||||||||| || |||||||||||||||    
T  55636046 aaaattagagttacaaaacttacctatcaataatttcaggttacaacatttcaaattttaat 55635985  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 360
Target Start/End: Original strand, 3671612 - 3671689
Alignment:
Q  283 cctgagtctgcatattgtctccagcaacaatatttcccaacgtgtgaagtacaggagtcaacactgaaggagatgggt 360  Q
    ||||||||||||| | ||||||  |||||||||||||||| ||| | ||| ||||| ||| |||||||||||||||||    
T  3671612 cctgagtctgcatgtcgtctccgccaacaatatttcccaatgtgcggagtgcaggaatcaccactgaaggagatgggt 3671689  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 52985206 - 52985261
Alignment:
Q  132 ttaataaaattagacttacaaaacatacctatcaatgatttcaggttataatattt 187  Q
    ||||| |||||||||||||||||  |||||||||||  ||||||| ||||||||||    
T  52985206 ttaatcaaattagacttacaaaatttacctatcaatagtttcaggatataatattt 52985261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 198
Target Start/End: Original strand, 54861546 - 54861575
Alignment:
Q  169 atttcaggttataatatttcaaattttaat 198  Q
    ||||||||||||||||||||||||||||||    
T  54861546 atttcaggttataatatttcaaattttaat 54861575  T

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Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 219 - 399
Target Start/End: Complemental strand, 9890206 - 9890019
Alignment:
Q  219 aaaagttaaatttaattagaaatatttgggtaacagctaattatatcaatcca-------ttatgacattacctgagtctgcatattgtctccagcaaca 311  Q
    |||||||| ||||||||||||||| ||||||| || ||||||  | |||||||       |||||||||||||||||| ||||| | ||||||  |||||    
T  9890206 aaaagttagatttaattagaaataattgggtagcaactaattgaaacaatccacaaccaattatgacattacctgagtttgcatgtcgtctccgccaaca 9890107  T
Q  312 atatttcccaacgtgtgaagtacaggagtcaacactgaaggagatgggtgccttcaaaacatgcgcatacatttagagccaaaataat 399  Q
    ||||||||||| ||| ||||| ||||| ||| |||||||||||| |||| |||||||||||||| ||| |||||||||||||| ||||    
T  9890106 atatttcccaatgtgcgaagtgcaggaatcaccactgaaggagaagggttccttcaaaacatgcacatgcatttagagccaaattaat 9890019  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 9890337 - 9890255
Alignment:
Q  118 tttgatgttttctcttaataaaattagact--tacaaaacatacctatcaatgatttcaggttataatatttcaaattttaat 198  Q
    |||| |||||||| ||||| ||||||||||  |||||||| |||||||||||  |||||||||||||||||||||||||||||    
T  9890337 tttggtgttttctattaatcaaattagactcttacaaaacttacctatcaatagtttcaggttataatatttcaaattttaat 9890255  T

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Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 269 - 403
Target Start/End: Complemental strand, 13402061 - 13401927
Alignment:
Q  269 ccattatgacattacctgagtctgcatattgtctccagcaacaatatttcccaacgtgtgaagtacaggagtcaacactgaaggagatgggtgccttcaa 368  Q
    |||| |||||||||||||||||||   ||  ||||| | |||||||||||||| |||| ||||| ||||  ||| ||||||||||||||||||||| |||    
T  13402061 ccatcatgacattacctgagtctgtgcatcatctcccgtaacaatatttcccaccgtgcgaagtgcagggatcagcactgaaggagatgggtgcctacaa 13401962  T
Q  369 aacatgcgcatacatttagagccaaaataatcaat 403  Q
     ||||||  ||| |||||||| ||||| |||||||    
T  13401961 cacatgcatataaatttagagtcaaaacaatcaat 13401927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 13402357 - 13402240
Alignment:
Q  82 tatcaatccagcttcaacaaccacatcctattgcactttgatgttttctcttaataaaattagacttacaaaacatacctatcaatgatttc-aggttat 180  Q
    |||||||| ||||||||||||||||| || | ||| |||| ||||||| || ||| ||||||||||| |||||  || |||||||| ||||| || ||||    
T  13402357 tatcaatcaagcttcaacaaccacatactttagcattttggtgttttccctaaatcaaattagacttgcaaaatttaactatcaataatttcaagtttat 13402258  T
Q  181 aatatttcaaattttaat 198  Q
    | ||||||||||||||||    
T  13402257 attatttcaaattttaat 13402240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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