View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_24 (Length: 455)
Name: NF16904_high_24
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Original strand, 21372251 - 21372678
Alignment:
| Q |
17 |
aatatttctatgacaggttagttgagatgcttaaactcaattaagtcctcaagagtgtatatacctacatgcttagtgtttttaaaaacctaataaacat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21372251 |
aatatttctatgacaggttagttgagatgcttaaactcaattaagtcctcaagattgtatatacctacatgcttagtgtttttaaaaacctaataaacat |
21372350 |
T |
|
| Q |
117 |
tttttctattttctaacaaatctttaatgaatggatnnnnnnncaggtttaacctaaagttacacacagctggaatcattgctgcatcctttggaatggc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21372351 |
tttttctattttctaacaaatctttaatgaatggataaaaaaacaggtttaacctaaagttacacacagctggaatcattgctgcatcctttggaatggc |
21372450 |
T |
|
| Q |
217 |
aaacatagttgctcgtccattcggaggatatgcatcagatgttgcagcaagattattcggcatgcgaggaagattatggacactctggatcctccaaacc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
21372451 |
aaacatagttgctcgtccattcggaggatatgcatcagatgttgcagcaagattattcggaatgcgaggaagaatatggacactctggatcctccaaacc |
21372550 |
T |
|
| Q |
317 |
ctaggaggggttttctgcatatggttaggacgtgcgaatacacttccgatcgcagtactatccatgattctcttctcagttggagcacaagcagcatgtg |
416 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21372551 |
ctaggaggagttttctgcatatggttaggacgtgcgaatacacttccgatcgcagtactatccatgatcctcttctcagttggagcacaagcagcatgtg |
21372650 |
T |
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| Q |
417 |
gtgcaacatttggaatcattccattcat |
444 |
Q |
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| T |
21372651 |
gtgcaacatttggaatcattccattcat |
21372678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Complemental strand, 21385306 - 21384879
Alignment:
| Q |
17 |
aatatttctatgacaggttagttgagatgcttaaactcaattaagtcctcaagagtgtatatacctacatgcttagtgtttttaaaaacctaataaacat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385306 |
aatatttctatgacaggttagttgagatgcttaaactcaattaagtcctcaagattgtatatacctacatgcttagtgtttttaaaaacctaataaacat |
21385207 |
T |
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| Q |
117 |
tttttctattttctaacaaatctttaatgaatggatnnnnnnncaggtttaacctaaagttacacacagctggaatcattgctgcatcctttggaatggc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385206 |
tttttctattttctaacaaatctttaatgaatggataaaaaaacaggtttaacctaaagttacacacagctggaatcattgctgcatcctttggaatggc |
21385107 |
T |
|
| Q |
217 |
aaacatagttgctcgtccattcggaggatatgcatcagatgttgcagcaagattattcggcatgcgaggaagattatggacactctggatcctccaaacc |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21385106 |
aaacatagttgctcgtccattcggtggatatgcatcagatgttgcagcaagattattcggtatgcgaggaagattatggacactctggatcctccaaacc |
21385007 |
T |
|
| Q |
317 |
ctaggaggggttttctgcatatggttaggacgtgcgaatacacttccgatcgcagtactatccatgattctcttctcagttggagcacaagcagcatgtg |
416 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21385006 |
ctaggaggagttttctgcatatggttaggacgtgcgaatacacttccgatcgcagtactatccatgatcctcttctcagttggagcacaagcagcatgtg |
21384907 |
T |
|
| Q |
417 |
gtgcaacatttggaatcattccattcat |
444 |
Q |
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|||||||||||||||||||||||||||| |
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|
| T |
21384906 |
gtgcaacatttggaatcattccattcat |
21384879 |
T |
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