View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_27 (Length: 446)
Name: NF16904_high_27
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 103 - 429
Target Start/End: Original strand, 28021432 - 28021758
Alignment:
| Q |
103 |
aaagagatttagattctttgtgatcgcattcatggatctcaattgcacaactctaatttctaaatatatttcaaaatacataatttatacaaatcatcta |
202 |
Q |
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| T |
28021432 |
aaagggatttagattctttgtgatcgcattcatggatctcaattgcacaactctaatttctaaatatatttcaaaatacataatttatacaaatcgtctg |
28021531 |
T |
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| Q |
203 |
atcttgatccaactatcaaaaatttcttgacaacgtgtatggaatttgtgtgtaggggaaactatatggacatgggatgatattctactgttgaatacaa |
302 |
Q |
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| T |
28021532 |
atcttgatccaactatcaaaaatttcttgacaacgtgtatggaatttgtgtgtaggggaaactatatggacatgggatgatattctactgttgaatacaa |
28021631 |
T |
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| Q |
303 |
gacaaatatatgatgttggatatgacatggttcttgtgcattgtcattcagctgctggcccagcctatgtatgtgccttatatatgcaaataagtttggt |
402 |
Q |
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| T |
28021632 |
gacaaatatatgatgttggatatgacatggttcttgtgcattgtcattcagctgctggcccagcctatgtatgtgccttatatatgcaaataagtttggt |
28021731 |
T |
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| Q |
403 |
gtgtgatggacttggccaggggaaact |
429 |
Q |
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|||||||| ||||||||||||||| |
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| T |
28021732 |
gtgtgatgagtctggccaggggaaact |
28021758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 28021209 - 28021434
Alignment:
| Q |
4 |
gggtagataattctataatgtgaggatgtagacgagttatagtactttattcaaacctatccatt-----tttaaatgttgatctannnnnnnn-ctcaa |
97 |
Q |
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| T |
28021209 |
gggtaaatacttatataatgtgaggatgtagacgagttatagtactttattcaaacctatccattattagtttaaatgtcaatctatttttttttctcaa |
28021308 |
T |
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| Q |
98 |
aggagaaagagatttagattctttgtgatcgcattcatggatctcaattgcacaactctaatttctaaatatatttcaaaatacataatttatacaaatc |
197 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28021309 |
aggagaaagggatttagattctttgtgatcgcattcatggatctcaattgcacaactctaatttctaaatatatttcaaagtacataatttatacaaatc |
28021408 |
T |
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| Q |
198 |
atctaatcttgatccaactatcaaaa |
223 |
Q |
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||| ||||||||||||||||||||| |
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| T |
28021409 |
gtctgatcttgatccaactatcaaaa |
28021434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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