View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_35 (Length: 400)
Name: NF16904_high_35
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 36338067 - 36337853
Alignment:
| Q |
12 |
acagatgattgaaaagtaaaataaataaataatttttcctagataacaactgacattttctaaa----gcagccaaacaagaaccactt---------ta |
98 |
Q |
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| T |
36338067 |
acagatgattgaaaagtaaaataaataaataatttttcctagataacaactgacattttctaaattaagcagccaaacaagaaccacttgtaggacttta |
36337968 |
T |
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| Q |
99 |
attatacatctatcagaaatttgtgaaatgattctgagaaggttgaaccatttgcatgtctgttgttgtttggcacgagttatcatcactgatcatgttc |
198 |
Q |
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| T |
36337967 |
attatacatctatcagaaatttgtgaaatgattctgagaaggttgaaccatttgcatgtctgttgttgtttggcatgagttatcatcactgatcatgttc |
36337868 |
T |
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| Q |
199 |
ctgtttgaatataac |
213 |
Q |
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| T |
36337867 |
ctgtttgaatataac |
36337853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 277 - 388
Target Start/End: Complemental strand, 36337788 - 36337677
Alignment:
| Q |
277 |
ggttagtggatgaaaagttgagcataatttttctataagcaaaattataacaccgtttattacatgaaaaatatcatttaaacacaattcaatgaaatta |
376 |
Q |
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| T |
36337788 |
ggttagtggatgaaaagttgagcataatttttctataagcaaaattataacaccatttattacatgaaaaatatcatttaaacacaattcaatgaaatta |
36337689 |
T |
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| Q |
377 |
aaagtactatct |
388 |
Q |
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| T |
36337688 |
aaagtactatct |
36337677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 19284223 - 19284131
Alignment:
| Q |
111 |
tcagaaatttgtgaaatgattctgagaaggttgaaccatttgcatgtctgttgttgtttggcacgagttatcatcactgatcatgttcctgtt |
203 |
Q |
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| T |
19284223 |
tcagaaacttgagaaatgactatgagaaggttgaaccatttgcaattctgtggttgcttggcatgagttatcatcattgatcatgttcctgtt |
19284131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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