View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_38 (Length: 367)
Name: NF16904_high_38
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 31901212 - 31901563
Alignment:
| Q |
1 |
tcaaatccttaaaatattgggcatggggattaaacatacacgtgcacggttcaattagcttggtcagtatcccatcctgtgagattgaatccatggaacc |
100 |
Q |
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| T |
31901212 |
tcaaaaccttaaaatcttgggcatggtggttaaacatacacgtgcacggttcaattagcttggacagtatcccatcctgtgagattgattccatggcacc |
31901311 |
T |
|
| Q |
101 |
tttcttgtatgctttttgcttggagtttaagtcagctcacatacgtggacacctaaaactacttgttcttgtgaatgcttcagctgtattggtttgaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| |
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| T |
31901312 |
tttcttgtatgctttttgcttggagtttaagtcagctcacatacgtggacacctaaaattacttgttcttgtgaatgcttcagctgtactagtttgaaga |
31901411 |
T |
|
| Q |
201 |
ttgtttgggaagtgacattgattggtcacacgtatactatgagtta-tttccgtctagttccaccatatctttggcatgattcacacccaaaaacaaatc |
299 |
Q |
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| T |
31901412 |
ttggttgagaagtgacattgattggtcacacgtatactatgagttattttccgtctagttccaccatatctttggcatgattcacacccaaaaacaaatc |
31901511 |
T |
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| Q |
300 |
catgttgtaattttagttgttattattatatttcaaaagttaattaaaattt |
351 |
Q |
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| T |
31901512 |
catgttgtaattttagttgttattattatatttcaaaagttaattaaaattt |
31901563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 17893103 - 17893152
Alignment:
| Q |
302 |
tgttgtaattttagttgttattattatatttcaaaagttaattaaaattt |
351 |
Q |
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| T |
17893103 |
tgttgtaattttagttgttattattatatttcaaaagttaattaaaattt |
17893152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 8040223 - 8040272
Alignment:
| Q |
302 |
tgttgtaattttagttgttattattatatttcaaaagttaattaaaattt |
351 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
8040223 |
tgttgtaattttaattgttattattatatttcaaaatttaattaaaattt |
8040272 |
T |
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