View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16904_high_4 (Length: 678)
Name: NF16904_high_4
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_4 |
 | |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 624; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 14 - 661
Target Start/End: Complemental strand, 111400 - 110753
Alignment:
| Q |
14 |
cacagagcaagcttatacacctttactatagatgtttacaaatagtatcccagttgatgatatatcaacattatttctcgtggcaacaataatattcacc |
113 |
Q |
| |
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|||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111400 |
cacaaagcaagcttatacacctttacgatatatgtttataaatagtatcccagttgatgatatatcaacattatttctcgtggcaacaataatattcacc |
111301 |
T |
|
| Q |
114 |
aaacagccgctccttataatctcccagattttacaagaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacacaaaataatccac |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111300 |
aaacagccgctccttataatctcccagattttacaaaaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacacaaaataatccac |
111201 |
T |
|
| Q |
214 |
tatcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagtgttttagagtta |
313 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111200 |
tgtcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagtgttttagagtta |
111101 |
T |
|
| Q |
314 |
catataaatcttaaataagtacaaagtatcattagattgactacaaatattaaaataagctaaaaaacaataataggatatcctataatctaaagaaaag |
413 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111100 |
catataaatcttaaataagtacaaagtatcattagattgactacaaatattaaaataagctaaaaaacaataataggatatcctataatctaaagaaaag |
111001 |
T |
|
| Q |
414 |
ccaagtagccaatgtgaggtaacttccattgcatcatgactgtgatcttgttgaaaatcgctattattctccgataatttcctgcgcacagttgtaacaa |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111000 |
ccaagtagccaatgtgaggtaacttccattgcatcatgactgtgatcttgttgaaaatcgctattattctccgataatttcctgcgcacagttgtaacaa |
110901 |
T |
|
| Q |
514 |
tccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgatttacccatgcgaaagctaaaacctttactcttggcatatcttacg |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110900 |
tccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgatttacccatgcgaaagctaaaacctttactcttggcatatcttacg |
110801 |
T |
|
| Q |
614 |
tagtaattctttacatcttcaattgatgcaaagtccattccttcaaag |
661 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110800 |
tagtaattctttacatcttcaattgatgcaaagtccattccttcaaag |
110753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 515 - 661
Target Start/End: Complemental strand, 48772453 - 48772298
Alignment:
| Q |
515 |
ccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattta---------cccatgcgaaagctaaaacctttactcttggcat |
605 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||| || | || | |
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| T |
48772453 |
ccctcctttaaacaaagaatctcttgaccaattaccctaccatccgttcttgatttagtaacacgacccatacgaaagctaaaacctttattcctcgcgt |
48772354 |
T |
|
| Q |
606 |
atcttacgtagtaattctttacatcttcaattgatgcaaagtccattccttcaaag |
661 |
Q |
| |
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| ||| |||||| |||||||||||||||||||||| ||| | ||||||||||||| |
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| T |
48772353 |
accttgtgtagtatttctttacatcttcaattgatgtaaacttcattccttcaaag |
48772298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 55 - 661
Target Start/End: Original strand, 20646506 - 20647118
Alignment:
| Q |
55 |
atagtatcccagttgatgatatatcaa-cattatttctcgtggcaacaataatattcaccaaacagccgctccttataatctcccagattttacaagaac |
153 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20646506 |
atagtatcccagttgatgatatatcaaacattatttctcgtggcaacaataatattcaccaaacagccgctccttataatctcccagattttacaaaaac |
20646605 |
T |
|
| Q |
154 |
acttgcatcaccgaaggaattataagcatcatcaccacataaagacacaaaataatccactatcataactattcaagaataacataaaattaagatttat |
253 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20646606 |
acttgcatcaccgaaggaattataagcatcatcaccacataaagacacaaaataatccactgtcataactattcaagaataacataaaattaagatttat |
20646705 |
T |
|
| Q |
254 |
atgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagtgttttagagttacatataaatcttaaataagtacaaagtatcattagattga |
353 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20646706 |
atgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagcgttttagagttacatataaatcttaaataagtacaaagtatcattagattga |
20646805 |
T |
|
| Q |
354 |
ctacaaatattaaaataagctaaaaaacaataataggatatcctataatctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgac |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20646806 |
ctacaaatattaaaataagctaaaaaacaataataggatatcctataatctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgac |
20646905 |
T |
|
| Q |
454 |
tgtgatcttgttgaaaatcgctattattctccgataatttcctgcgcacagttgtaacaatccctcctttgaacaaacaatctcttgaccaattaccata |
553 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20646906 |
tgtgatcttgttgaaaatcgctattattttccgataatttcctgcgcacagttgtaacaatccctcctttgaacaaacaatctcttgaccaattatcata |
20647005 |
T |
|
| Q |
554 |
ccatttgttcttgatttacccatgcgaaagctaaaac-----ctttactcttggcatatcttacgtagtaattctttacatcttcaattgatgcaaagtc |
648 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20647006 |
ccatttgttcttgatttacccatgcgaaagctaaaacctatactatactcttggcatatcttacgtagtaattctttacatcttcaattgatgcaaagtc |
20647105 |
T |
|
| Q |
649 |
cattccttcaaag |
661 |
Q |
| |
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||||||||||||| |
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|
| T |
20647106 |
cattccttcaaag |
20647118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 515 - 571
Target Start/End: Complemental strand, 19329124 - 19329068
Alignment:
| Q |
515 |
ccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattta |
571 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
19329124 |
ccctcctttgaacaaagaatctcttgaccaattaccataccattcgttcttgattta |
19329068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 515 - 661
Target Start/End: Complemental strand, 63991 - 63836
Alignment:
| Q |
515 |
ccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattta---------cccatgcgaaagctaaaacctttactcttggcat |
605 |
Q |
| |
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|||||||||||||||| ||| ||||||||||| || |||||||| |||||||||||| ||||||||||| ||||||||||| ||||||| | |
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| T |
63991 |
ccctcctttgaacaaagaatttcttgaccaatcacaataccattcgttcttgatttagtaacccgacccatgcgaaaactaaaaccttttttcttggcgt |
63892 |
T |
|
| Q |
606 |
atcttacgtagtaattctttacatcttcaattgatgcaaagtccattccttcaaag |
661 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
63891 |
accttacgtagtaatcctttacatcttcaattgatgcaaactccattccttcaaag |
63836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 515 - 658
Target Start/End: Complemental strand, 22639028 - 22638877
Alignment:
| Q |
515 |
ccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattta--------cccatgcgaaagctaaaacctttactcttggcata |
606 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| || |||||||||||||||||| |||| |||||||||||||||||| || | ||||| |
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|
| T |
22639028 |
ccctcctttgaacaaagaatctcctgaccaattatcaatccatttgttcttgatttaataatacgcccaagcgaaagctaaaacctttcttccttgcata |
22638929 |
T |
|
| Q |
607 |
tcttacgtagtaattctttacatcttcaattgatgcaaagtccattccttca |
658 |
Q |
| |
|
||| |||||||| ||| ||||||| | ||||||||| |||||||||||| |
|
|
| T |
22638928 |
acttgtatagtaattttttgcatcttcgaatgatgcaaaatccattccttca |
22638877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 102 - 277
Target Start/End: Complemental strand, 1590 - 1415
Alignment:
| Q |
102 |
ataatattcaccaaacagccgctccttataatctcccagattttacaagaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacac |
201 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||| ||||||||||||| |||||| || || | |||||| |||| |||||||||| || ||||||| |
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|
| T |
1590 |
ataatattcaccacatagcagctccttataatcttccagattttacaaaaacactctcagcagcaaaggaaagataatcatcatcaccgtatgaagacac |
1491 |
T |
|
| Q |
202 |
aaaataatccactatcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaa |
277 |
Q |
| |
|
|| | || ||| ||||||||||| |||||||| | |||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1490 |
aacagaacttactgtcataactattgaagaataaaagaaaattaagatttacatgaaaccaaatccattgatggaa |
1415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 515 - 661
Target Start/End: Complemental strand, 16080351 - 16080195
Alignment:
| Q |
515 |
ccctcctttgaacaaacaatctcttgaccaatt-accataccatttgttcttgattta---------cccatgcgaaagctaaaacctttactcttggca |
604 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| ||| |||||| |||||||||||| ||||| |||||||||||||||||| || | || |
|
|
| T |
16080351 |
ccctccttagaacaaagaatctcttgaccaatttaccctaccatccgttcttgatttagtaacacgacccatacgaaagctaaaacctttattcctcgcg |
16080252 |
T |
|
| Q |
605 |
tatcttacgtagtaattctttacatcttcaattgatgcaaagtccattccttcaaag |
661 |
Q |
| |
|
|| ||| |||||| |||||||||||||||||||||| ||| ||||||| ||||||| |
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|
| T |
16080251 |
taccttgtgtagtatttctttacatcttcaattgatgtaaactccattcattcaaag |
16080195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 519 - 658
Target Start/End: Original strand, 38590228 - 38590376
Alignment:
| Q |
519 |
cctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattt---------acccatgcgaaagctaaaacctttactcttggcatatct |
609 |
Q |
| |
|
|||||||||||| |||||| |||||||||| || |||| |||||||||||| ||||| |||||||||||||||||| || | || || || |
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|
| T |
38590228 |
cctttgaacaaagaatctcctgaccaattatcaatccatctgttcttgatttagtaatacgacccaagcgaaagctaaaacctttgttccttgcgtacct |
38590327 |
T |
|
| Q |
610 |
tacgtagtaattctttacatcttcaattgatgcaaagtccattccttca |
658 |
Q |
| |
|
| |||||||||||| ||||||||| ||||||||| ||| |||||||| |
|
|
| T |
38590328 |
tgtatagtaattctttgcatcttcaaatgatgcaaaatccgttccttca |
38590376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 51168688 - 51168625
Alignment:
| Q |
17 |
agagcaagcttatacacctttactatagatgtttacaaatagtatcccagttgatgatatatca |
80 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| | |||||||||||| | |||||||||||||| |
|
|
| T |
51168688 |
agagcaaccttatacaactttactataaatggtcacaaatagtatcataattgatgatatatca |
51168625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 567
Target Start/End: Original strand, 44886051 - 44886103
Alignment:
| Q |
515 |
ccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttga |
567 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| |||||| ||||||||||| |
|
|
| T |
44886051 |
ccctcctttgaacaaagaatttcttgaccaattatcataccgtttgttcttga |
44886103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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