View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16904_high_41 (Length: 355)

Name: NF16904_high_41
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16904_high_41
NF16904_high_41
[»] chr2 (6 HSPs)
chr2 (1-339)||(9404484-9404809)
chr2 (28-65)||(34339034-34339071)
chr2 (31-65)||(2400070-2400104)
chr2 (28-65)||(11393777-11393814)
chr2 (28-65)||(11410438-11410475)
chr2 (28-65)||(42974263-42974300)
[»] chr3 (7 HSPs)
chr3 (71-171)||(43115073-43115173)
chr3 (28-65)||(29094292-29094329)
chr3 (30-65)||(46759176-46759211)
chr3 (36-65)||(39971238-39971267)
chr3 (28-65)||(49772790-49772827)
chr3 (29-65)||(28289243-28289279)
chr3 (68-172)||(37273148-37273252)
[»] chr8 (11 HSPs)
chr8 (28-65)||(26716558-26716595)
chr8 (28-62)||(8578533-8578567)
chr8 (150-212)||(44236735-44236797)
chr8 (28-65)||(5226513-5226550)
chr8 (28-65)||(8603612-8603649)
chr8 (29-62)||(11813230-11813263)
chr8 (28-65)||(12972767-12972804)
chr8 (28-65)||(27320227-27320264)
chr8 (28-65)||(34563161-34563198)
chr8 (28-65)||(35869748-35869785)
chr8 (29-65)||(26813927-26813963)
[»] chr7 (6 HSPs)
chr7 (29-66)||(40438982-40439019)
chr7 (98-170)||(39345515-39345587)
chr7 (26-65)||(19624135-19624174)
chr7 (32-65)||(3610862-3610895)
chr7 (148-205)||(33894721-33894778)
chr7 (29-65)||(45078205-45078241)
[»] chr5 (9 HSPs)
chr5 (28-65)||(6738529-6738566)
chr5 (28-65)||(27104536-27104573)
chr5 (75-171)||(10272384-10272480)
chr5 (29-65)||(10391265-10391301)
chr5 (28-65)||(3951528-3951565)
chr5 (28-65)||(26516209-26516246)
chr5 (28-65)||(29115335-29115372)
chr5 (28-65)||(29588791-29588828)
chr5 (32-65)||(32059710-32059743)
[»] chr4 (7 HSPs)
chr4 (31-68)||(39063765-39063802)
chr4 (142-205)||(7367973-7368036)
chr4 (28-65)||(24193496-24193533)
chr4 (28-65)||(24443949-24443986)
chr4 (28-61)||(25409797-25409830)
chr4 (28-65)||(44319861-44319898)
chr4 (28-65)||(46860280-46860317)
[»] scaffold0044 (1 HSPs)
scaffold0044 (13-65)||(52062-52114)
[»] chr1 (2 HSPs)
chr1 (28-64)||(4363754-4363790)
chr1 (33-65)||(16980742-16980774)
[»] chr6 (3 HSPs)
chr6 (71-134)||(3528820-3528883)
chr6 (28-61)||(1497891-1497924)
chr6 (28-65)||(31668807-31668844)
[»] scaffold0091 (1 HSPs)
scaffold0091 (28-65)||(5930-5967)
[»] scaffold0654 (1 HSPs)
scaffold0654 (33-65)||(6759-6791)
[»] scaffold0590 (1 HSPs)
scaffold0590 (13-65)||(1196-1248)
[»] scaffold0275 (1 HSPs)
scaffold0275 (13-65)||(2727-2779)
[»] scaffold0014 (1 HSPs)
scaffold0014 (33-65)||(116678-116710)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 9404484 - 9404809
Alignment:
Q  1 taaagcgccaatcttaattaagtcataatagcataaacacttatcatataagtgcttatgtataa-ctataaactatcttggagagcatatgaaacttag 99  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9404484 taaagcgcgaatcttaattaagtcataatagcataaacacttatcatataagtgcttatgtataaactataaactatcttggagagcatatgaaacttag 9404583  T
Q  100 ctgaaaactagttacggacatgtcacaaattgtttctaagatctctaccaaacagtctcacaagtgattatgccttttgataaacttaaataagttactc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9404584 ctgaaaactagttacggacatgtcacaaattgtttctaagatctctaccaaacagtctcacaagtgattatgccttttgataaacttaaataagttactc 9404683  T
Q  200 caaacaagctcttaataagcttgtttgcatatcaatgcctttagaaataaataagtagtttgaggtagttacttgttctgtgttacttgttagtaatgtg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||              |||||||||||||||||||    
T  9404684 caaacaagctcttaataagcttgtttgcatatcaatgcctttagaaataagtaagtagtttgaggta--------------gttacttgttagtaatgtg 9404769  T
Q  300 attggataaaatatgtgtatcatcagttatcacagcttat 339  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9404770 attggataaaatatgtgtatcatcagttatcacagcttat 9404809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 34339034 - 34339071
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34339034 atagcataaacacttatcatataagtgcttatgtataa 34339071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 2400070 - 2400104
Alignment:
Q  31 gcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||| |||||||||||||||||||||||||    
T  2400070 gcataaacaattatcatataagtgcttatgtataa 2400104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 11393814 - 11393777
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  11393814 atagcataaacatttatcatttaagtgcttatgtataa 11393777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 11410475 - 11410438
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  11410475 atagcataaacatttatcatttaagtgcttatgtataa 11410438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 42974263 - 42974300
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  42974263 atagcataaacacttatcatattagtgcttgtgtataa 42974300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 71 - 171
Target Start/End: Original strand, 43115073 - 43115173
Alignment:
Q  71 aactatcttggagagcatatgaaacttagctgaaaactagttacggacatgtcacaaattgtttctaagatctctaccaaacagtctcacaagtgattat 170  Q
    ||||||| | |||||| |||| || | |||||||||| ||||| |||||||||| || ||||||| |  | |||| ||||||| ||||||||||||||||    
T  43115073 aactatcattgagagcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaagtgattat 43115172  T
Q  171 g 171  Q
    |    
T  43115173 g 43115173  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 29094292 - 29094329
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  29094292 atagcataaacacttatcatataagtgtttatgtataa 29094329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 46759211 - 46759176
Alignment:
Q  30 agcataaacacttatcatataagtgcttatgtataa 65  Q
    |||||||||||||||||| |||||||||||||||||    
T  46759211 agcataaacacttatcatttaagtgcttatgtataa 46759176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 39971238 - 39971267
Alignment:
Q  36 aacacttatcatataagtgcttatgtataa 65  Q
    ||||||||||||||||||||||||||||||    
T  39971238 aacacttatcatataagtgcttatgtataa 39971267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 49772827 - 49772790
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  49772827 atagcatagacacttatcatataagtgtttatgtataa 49772790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 28289279 - 28289243
Alignment:
Q  29 tagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  28289279 tagcataaacacttatcatctaagtgctcatgtataa 28289243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 172
Target Start/End: Original strand, 37273148 - 37273252
Alignment:
Q  68 ataaactatcttggagagcatatgaaacttagctgaaaactagttacggacatgtcacaaattgtttctaagatctctaccaaacagtctcacaagtgat 167  Q
    |||| |||||||||||| | |||| || | || ||||||| | ||| |||||||||| || ||||||| |  | |||| |||||||||||||| |||| |    
T  37273148 ataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgct 37273247  T
Q  168 tatgc 172  Q
    |||||    
T  37273248 tatgc 37273252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 26716595 - 26716558
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  26716595 atagcataaacacttattatataagtgcttatgtataa 26716558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 8578533 - 8578567
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgta 62  Q
    ||||||||| |||||||||||||||||||||||||    
T  8578533 atagcataagcacttatcatataagtgcttatgta 8578567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 44236797 - 44236735
Alignment:
Q  150 aacagtctcacaagtgattatgccttttgataaacttaaataagttactccaaacaagctctt 212  Q
    |||||||||||||||| |||||||  | |||||||| ||||||| || |||||||| ||||||    
T  44236797 aacagtctcacaagtgcttatgccagtagataaactcaaataaggtaatccaaacaggctctt 44236735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 5226513 - 5226550
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  5226513 atagcataaacatttatcatataagtgtttatgtataa 5226550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 8603612 - 8603649
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  8603612 atagcataagcacttaccatataagtgcttatgtataa 8603649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 11813263 - 11813230
Alignment:
Q  29 tagcataaacacttatcatataagtgcttatgta 62  Q
    |||||||||| |||||||||||||||||||||||    
T  11813263 tagcataaacgcttatcatataagtgcttatgta 11813230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 12972767 - 12972804
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||| || |||||||||||||||||||||||||    
T  12972767 atagcataagcatttatcatataagtgcttatgtataa 12972804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 27320227 - 27320264
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  27320227 atagcataaacacttatcacataagtgcttacgtataa 27320264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 34563161 - 34563198
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  34563161 atagcataaacatttatcatataagtgcttatatataa 34563198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 35869748 - 35869785
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  35869748 atagcataagcacttatcatataagttcttatgtataa 35869785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 26813963 - 26813927
Alignment:
Q  29 tagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  26813963 tagcacaaaaacttatcatataagtgcttatgtataa 26813927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 40438982 - 40439019
Alignment:
Q  29 tagcataaacacttatcatataagtgcttatgtataac 66  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  40438982 tagcataaacactaatcatataagtgcttatgtataac 40439019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 39345515 - 39345587
Alignment:
Q  98 agctgaaaactagttacggacatgtcacaaattgtttctaagatctctaccaaacagtctcacaagtgattat 170  Q
    |||||||| | | ||| |||||||||| ||| |||||| | || ||||||||||||||||||||||| |||||    
T  39345515 agctgaaagcaacttatggacatgtcataaactgtttccatgaactctaccaaacagtctcacaagtaattat 39345587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 19624135 - 19624174
Alignment:
Q  26 taatagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||||||||||||||||||||| |||||| |||||    
T  19624135 taatagcataaacacttatcatataagggcttatatataa 19624174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 3610895 - 3610862
Alignment:
Q  32 cataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||||| ||||||||||||||||||||||    
T  3610895 cataaacacttgtcatataagtgcttatgtataa 3610862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 33894721 - 33894778
Alignment:
Q  148 caaacagtctcacaagtgattatgccttttgataaacttaaataagttactccaaaca 205  Q
    |||||||||||||||||| ||||| | |||||||| || ||||||| || ||||||||    
T  33894721 caaacagtctcacaagtgcttatgtcatttgataagctcaaataagctaatccaaaca 33894778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 45078205 - 45078241
Alignment:
Q  29 tagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||||  |||||||||||||||||||||||||    
T  45078205 tagcataaacgtttatcatataagtgcttatgtataa 45078241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 6738566 - 6738529
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    |||||||||||||||||||||||||| |||||||||||    
T  6738566 atagcataaacacttatcatataagtacttatgtataa 6738529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 27104573 - 27104536
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  27104573 atagcataaacacttatcatataagtgcttacgtataa 27104536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 10272480 - 10272384
Alignment:
Q  75 atcttggagagcatatgaaacttagctgaaaactagttacggacatgtcacaaattgtttctaagatctctaccaaacagtctcacaagtgattatg 171  Q
    |||||||||||  ||||||| | |||||||||| | |||| ||||||||| || |||||||||  | | || ||||| |||| ||||||||||||||    
T  10272480 atcttggagagtttatgaaaataagctgaaaacaacttacagacatgtcataagttgtttctataagcactcccaaatagtcacacaagtgattatg 10272384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 10391265 - 10391301
Alignment:
Q  29 tagcataaacacttatcatataagtgcttatgtataa 65  Q
    |||||||||||||||||||||||||||||| ||||||    
T  10391265 tagcataaacacttatcatataagtgcttacgtataa 10391301  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 3951528 - 3951565
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  3951528 atagcataaatgcttatcatataagtgcttatgtataa 3951565  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 26516209 - 26516246
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  26516209 atagcataagcgcttatcatataagtgcttatgtataa 26516246  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 29115372 - 29115335
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  29115372 atagcataaacatttatcataaaagtgcttatgtataa 29115335  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 29588791 - 29588828
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  29588791 atagcataaacactttttatataagtgcttatgtataa 29588828  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 32059743 - 32059710
Alignment:
Q  32 cataaacacttatcatataagtgcttatgtataa 65  Q
    |||||| |||||||||||||||||||||||||||    
T  32059743 cataaatacttatcatataagtgcttatgtataa 32059710  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 39063802 - 39063765
Alignment:
Q  31 gcataaacacttatcatataagtgcttatgtataacta 68  Q
    |||||| |||||||||||||||||||||||||||||||    
T  39063802 gcataaccacttatcatataagtgcttatgtataacta 39063765  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 7368036 - 7367973
Alignment:
Q  142 ctctaccaaacagtctcacaagtgattatgccttttgataaacttaaataagttactccaaaca 205  Q
    |||| ||||||||||||||||| | |||||||| | |||||||| |||||||| | ||||||||    
T  7368036 ctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaataagtcaatccaaaca 7367973  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 24193496 - 24193533
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  24193496 atagcataaacgcttatcatataagtacttatgtataa 24193533  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 24443949 - 24443986
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  24443949 atagcataagcacttatcatataagttcttatgtataa 24443986  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 25409797 - 25409830
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgt 61  Q
    |||||||||||||||||||||||| |||||||||    
T  25409797 atagcataaacacttatcatataactgcttatgt 25409830  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 44319861 - 44319898
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  44319861 atagcataagcacttatcatataagtgctcatgtataa 44319898  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 46860280 - 46860317
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  46860280 atagcataaacacttatgatataagtgcttatgaataa 46860317  T

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Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 52114 - 52062
Alignment:
Q  13 cttaattaagtcataatagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||||   |||||||||||| ||||| |||||||||||||||||||||    
T  52114 cttaattaagctctaatagcataaagacttaacatataagtgcttatgtataa 52062  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 4363790 - 4363754
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtata 64  Q
    ||||||||||||||| |||||||||||||||||||||    
T  4363790 atagcataaacacttgtcatataagtgcttatgtata 4363754  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 16980742 - 16980774
Alignment:
Q  33 ataaacacttatcatataagtgcttatgtataa 65  Q
    ||||| |||||||||||||||||||||||||||    
T  16980742 ataaatacttatcatataagtgcttatgtataa 16980774  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 3528820 - 3528883
Alignment:
Q  71 aactatcttggagagcatatgaaacttagctgaaaactagttacggacatgtcacaaattgttt 134  Q
    |||||||||||||||| ||||||| | || ||||||| ||||| |||||||||| || ||||||    
T  3528820 aactatcttggagagcttatgaaaataagatgaaaacaagttatggacatgtcataagttgttt 3528883  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 1497891 - 1497924
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgt 61  Q
    |||||||||||||||||||| |||||||||||||    
T  1497891 atagcataaacacttatcatttaagtgcttatgt 1497924  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 31668844 - 31668807
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    ||||||||| || |||||||||||||||||||||||||    
T  31668844 atagcataagcaattatcatataagtgcttatgtataa 31668807  T

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Target: scaffold0091 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 5930 - 5967
Alignment:
Q  28 atagcataaacacttatcatataagtgcttatgtataa 65  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  5930 atagcataaacatttatcatataagtgtttatgtataa 5967  T

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Target: scaffold0654 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 6791 - 6759
Alignment:
Q  33 ataaacacttatcatataagtgcttatgtataa 65  Q
    |||| ||||||||||||||||||||||||||||    
T  6791 ataagcacttatcatataagtgcttatgtataa 6759  T

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Target: scaffold0590 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 1248 - 1196
Alignment:
Q  13 cttaattaagtcataatagcataaacacttatcatataagtgcttatgtataa 65  Q
    |||||||||||  | |||||||||||   ||||||||||||||||||||||||    
T  1248 cttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataa 1196  T

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Target: scaffold0275 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 2727 - 2779
Alignment:
Q  13 cttaattaagtcataatagcataaacacttatcatataagtgcttatgtataa 65  Q
    |||||||||||  | |||||||||||   ||||||||||||||||||||||||    
T  2727 cttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataa 2779  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 116710 - 116678
Alignment:
Q  33 ataaacacttatcatataagtgcttatgtataa 65  Q
    |||| ||||||||||||||||||||||||||||    
T  116710 ataagcacttatcatataagtgcttatgtataa 116678  T

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