View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_43 (Length: 352)
Name: NF16904_high_43
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_43 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 2144505 - 2144831
Alignment:
| Q |
8 |
aagcataggtttctaccatatatatcagggtttgtatagtttgtcttaaaccaaattgaactagatgatcacaacctctttaactaggccattcatacct |
107 |
Q |
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| T |
2144505 |
aagcataggtttctaccatat----cagggtttgcatattttgtcttaaaccaaattgaactagatgatcacaacctctttaactaggccattcatacct |
2144600 |
T |
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| Q |
108 |
tgatcgaaatagagccatattagttaggtgtttttgtcaaaggacacgacatatgggtcataaagttcaaacatggatctaatgtatggtccaattctaa |
207 |
Q |
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| T |
2144601 |
tgatcgaaatagagccatattagttaggtgtctttgtcaaaggacacgacgtatgggtcataaagttctaacatggatctaatgtatggtccaattctaa |
2144700 |
T |
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| Q |
208 |
tagcatatagtatatagatttgtggctacacatactctcgtgagaaactatgttaagaggcacgtaggtagaagctgtatacatacacctaaataattta |
307 |
Q |
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| T |
2144701 |
tagcatatagtatatagatttgtggctacacatactctcgtgagaaactatgttaaaaggcacgtaggtagaagctgtatacatacacctaaacaattta |
2144800 |
T |
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| Q |
308 |
ctcttgttaatttaatgtaggtaaccttttt |
338 |
Q |
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| T |
2144801 |
ctcttgttaatttaatgtaggtaaccttttt |
2144831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 2139335 - 2139411
Alignment:
| Q |
179 |
catggatctaatgtatggtccaattctaatagcatatagtatatagatttgtggctacacatactctcgtgagaaacta |
257 |
Q |
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| T |
2139335 |
catggatctaatgtatggtccaattctaatagc--atagtatatagattaagggcaacacatactcttatgagaaacta |
2139411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 2139228 - 2139319
Alignment:
| Q |
55 |
aaaccaaattgaactagatgatcacaacctctttaactaggccattcataccttgatcgaaatagagccatattagttaggtgtttttgtcaaaggaca |
153 |
Q |
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| T |
2139228 |
aaaccaaattgaactagagggtcacaacctctttaactaagc----cataccttgattgaaatataacca---ttgttaggagcttttgtcaaaggaca |
2139319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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