View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_49 (Length: 326)
Name: NF16904_high_49
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_49 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 326
Target Start/End: Original strand, 31900723 - 31901030
Alignment:
| Q |
16 |
gaacagaacagctaagaaaaagtacaaaaatttaaaatctatagagnnnnnnnnnaggaaaaatctatgaagagttttcaa-gtaaaaattaagattttt |
114 |
Q |
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| T |
31900723 |
gaacagaacagctaacaaaaagtgcaataatttaaaatctatagagtttttttt-aggaaaaatctatgaagagttttcaatgtaaaaattaagattttt |
31900821 |
T |
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| Q |
115 |
attaaagttgaaattttaaagacatgaaaaggannnnnnnnncagagaatgcatagttgtttattcatttgacaatttcacaataaatgaaataacatat |
214 |
Q |
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| T |
31900822 |
attaaagttgaaattttaaagacatgaaaaggaatttttttt-agagaatccatagttgtttattcatttgagaatttcacaataaatgaaataacatat |
31900920 |
T |
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| Q |
215 |
agttaagcaacatataaataaaacgattcgtaaattgtgttaaacaatttgagttaagatatgatgtctaataaaactgtgttgtaattcttaacttaat |
314 |
Q |
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|||||||||||||||||||||| || |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31900921 |
tgttaagcaacatataaataaaatgactcgtaaat--tgttaaacaattttagttaagatatgatgtccaataaaactgtgttgtaattcttaacttaat |
31901018 |
T |
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| Q |
315 |
gtagtgattttg |
326 |
Q |
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|||||||||||| |
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| T |
31901019 |
gtagtgattttg |
31901030 |
T |
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