View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16904_high_54 (Length: 313)
Name: NF16904_high_54
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_54 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 2 - 147
Target Start/End: Original strand, 7605100 - 7605245
Alignment:
| Q |
2 |
accggcacaaaaacatagtactaatacaacttcgttcacaacaaaagaaaccaccacttgcatcttatcaaagagaggaatgttaaggtcacatcctctg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7605100 |
accggcacaaaaacatagtactaatacaacttcgttcacaacaaaagaaaccaccacttgcatcttatcaaagagaggaatgttaaggtcacaccctctg |
7605199 |
T |
|
| Q |
102 |
ccacatcctttaacacacttcaatggaaacttatcatatcattcac |
147 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7605200 |
ccacaccctttaacacactccaatggaaacttatcatatcattcac |
7605245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 7605338 - 7605396
Alignment:
| Q |
240 |
aagatttaacccaaatttgacgttttggaaaactcctccactcttaagatggaagattt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7605338 |
aagatttaacccaaatttgacgttttggaaaactcctccactcttaagatggaagattt |
7605396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 8942944 - 8942803
Alignment:
| Q |
7 |
cacaaaaacatagtactaatacaacttcgttcacaacaaaa-gaaaccaccacttgcatcttatcaaagagaggaatgttaaggtcacatcctctgccac |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||| |
|
|
| T |
8942944 |
cacaaaaatatagtactaatacaacttcgtgcacaacaaaaagaaaccaccacttgcatcttatcaaagagaggaatgctaaggccacaccctctgacac |
8942845 |
T |
|
| Q |
106 |
atcctttaacacacttcaatggaaacttatcatatcattcac |
147 |
Q |
| |
|
| ||||| |||| ||||||||||||||| ||| |||||||| |
|
|
| T |
8942844 |
accctttggcacatttcaatggaaacttaccatgtcattcac |
8942803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 298
Target Start/End: Complemental strand, 8942702 - 8942646
Alignment:
| Q |
239 |
gaagatttaacccaaatttgacgttttggaaaactcctccactcttaagatggaagattt |
298 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||| |
|
|
| T |
8942702 |
gaagatttaacccaaatttgacattctggaaaa---ctccactcttaaaatggaagattt |
8942646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 298
Target Start/End: Complemental strand, 38715157 - 38715101
Alignment:
| Q |
239 |
gaagatttaacccaaatttgacgttttggaaaactcctccactcttaagatggaagattt |
298 |
Q |
| |
|
|||||||||||| |||| |||||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
38715157 |
gaagatttaacctaaatatgacgtattggaaaa---ctccactcttacgatggaagattt |
38715101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University