View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_55 (Length: 310)
Name: NF16904_high_55
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_55 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 53675239 - 53675505
Alignment:
| Q |
1 |
tgatggagacacatatatacttgtatgatttgattcacgtgtgtttgaaattaattacctgtttggaccaacaacaagtctgtgcaaattctccaagcac |
100 |
Q |
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| T |
53675239 |
tgatggagacacatatatacttgtatgatttgattcacgtgtgtttgaaattaattacctgtttggaccaac---aagtctgtgcaaattctccaagcac |
53675335 |
T |
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| Q |
101 |
agatataacatatgcttttgcttgcctaagttgtgattgtcttcttctcactgatacacgtttcttcatattctctgctactgaaaattgaacaaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53675336 |
agatataacatatgcttttgcttgcctaagttgtgattgtcttcttctcactgatacacgtttcttcatattctctgctactgaaaattgaacaaatttt |
53675435 |
T |
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| Q |
201 |
caggctattaaaagaacactaataattcacagtatgaaaaaacggttgaataaattgtacatgttaaaat |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53675436 |
caggctattaaaagaacactaataattcacagtatgaaaaaacggttgaataaattgtacatgttaaaat |
53675505 |
T |
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