View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_60 (Length: 294)
Name: NF16904_high_60
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_60 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 27 - 277
Target Start/End: Complemental strand, 37578093 - 37577843
Alignment:
| Q |
27 |
ttcttatatacattactagaatttcctttaggatagtgttgaaggctttctcnnnnnnnttgaaatgcttacattcaatgttacaaattaagctaaaagc |
126 |
Q |
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| T |
37578093 |
ttcttatatacattactagaatttcctttaggatagtgttgaaggctttctcaaaaaaattgaaatgcttacattcaatgttacaaattaagctaaaagc |
37577994 |
T |
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| Q |
127 |
tggactctagaaggagcagcacatgatatggaacgtatgaagatgcaaacaaccgagttggccaatcccaacacaattccaaccatcacctgaccgcgct |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37577993 |
tggactctagaaggagcagcacatgatatggaacgtatgaagatgcaaacaaccgagttggccaatcccaacacaattccaaccatcacctgaccgcgct |
37577894 |
T |
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| Q |
227 |
ttggaatcggacgatcacagataatccttcctaataatccaccgttgattt |
277 |
Q |
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| T |
37577893 |
ttggaatcggacgatcacagataatccttcctaataatccaccgttgattt |
37577843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 27 - 277
Target Start/End: Complemental strand, 37584216 - 37583966
Alignment:
| Q |
27 |
ttcttatatacattactagaatttcctttaggatagtgttgaaggctttctcnnnnnnnttgaaatgcttacattcaatgttacaaattaagctaaaagc |
126 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37584216 |
ttcttatatacattactagaatttcctttaggatagtgttgaaggctttctcaaaaaaattgaaatgcttacattcaatgttacaaattaagctaaaagc |
37584117 |
T |
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| Q |
127 |
tggactctagaaggagcagcacatgatatggaacgtatgaagatgcaaacaaccgagttggccaatcccaacacaattccaaccatcacctgaccgcgct |
226 |
Q |
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| T |
37584116 |
tggactctagaaggagcagcacatgatatggaacgtatgaagatgcaaacaaccgagttggccaatcccaacacaattccaaccatcacctgaccgcgct |
37584017 |
T |
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| Q |
227 |
ttggaatcggacgatcacagataatccttcctaataatccaccgttgattt |
277 |
Q |
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| T |
37584016 |
ttggaatcggacgatcacagataatccttcctaataatccaccgttgattt |
37583966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 27 - 277
Target Start/End: Complemental strand, 37585352 - 37585102
Alignment:
| Q |
27 |
ttcttatatacattactagaatttcctttaggatagtgttgaaggctttctcnnnnnnnttgaaatgcttacattcaatgttacaaattaagctaaaagc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37585352 |
ttcttatatacattactagaatttcctttaggatagtgttgaaggctttctcaaaaaaattgaaatgcttacattcaatgttacaaattaagctaaaagc |
37585253 |
T |
|
| Q |
127 |
tggactctagaaggagcagcacatgatatggaacgtatgaagatgcaaacaaccgagttggccaatcccaacacaattccaaccatcacctgaccgcgct |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37585252 |
tggactctagaaggagcagcacatgatatggaacgtatgaagatgcaaacaaccgagttggccaatcccaacacaattccaaccatcacctgaccgcgct |
37585153 |
T |
|
| Q |
227 |
ttggaatcggacgatcacagataatccttcctaataatccaccgttgattt |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37585152 |
ttggaatcggacgatcacagataatccttcctaataatccaccgttgattt |
37585102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 3103904 - 3103996
Alignment:
| Q |
164 |
tgaagatgcaaacaaccgagttggccaatcccaacacaattccaaccatcacctgaccgcgctttggaatcggacgatcacagataatccttc |
256 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||| | |||||||||| ||| | ||||||||||| ||||||| ||||||| |
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| T |
3103904 |
tgaagatgcaaacaactgagttggctaatcccaacacaattccaagcttcacctgaccccgcctcggaatcggacggccacagatgatccttc |
3103996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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