View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16904_high_61 (Length: 290)
Name: NF16904_high_61
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_61 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 24456844 - 24456573
Alignment:
| Q |
1 |
ctttgtgaatacaatgctaaaattaattgatcgtggtcaatacagcaagaatacggatctctctgagacagttgctgaagcaacatctatattgtcttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24456844 |
ctttgtgaatacaatgctaaaattaattgatcgtggtcaatacagcaagaatacggatctctctgagacagttgctgaagcaacatctatattgtcttat |
24456745 |
T |
|
| Q |
101 |
gtggaaccctcactggtccttccatttgtggcatctaggtttcaaatggcccttgagacggttagttgtgttgattgaatatttttcatggtagaatttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24456744 |
gtggaaccctcactggtccttccatttgtggcatctaggtttcaaatggcccttgagacggttagttgtgttgattgaatatttttcatggtagaatttc |
24456645 |
T |
|
| Q |
201 |
agaaatcatatgtagtcagtggaattacaaagaataatattttcttcttggtaatatgtccactgagggata |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24456644 |
agaaatcatatgtagtcagtggaattacaaagaataatattttcttcttggtaatatgtccactgagggata |
24456573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 24474257 - 24473986
Alignment:
| Q |
1 |
ctttgtgaatacaatgctaaaattaattgatcgtggtcaatacagcaagaatacggatctctctgagacagttgctgaagcaacatctatattgtcttat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24474257 |
ctttgtgaatacaatgctaaagttaattgatcgtggtcaatacagcaagaatgagcatctctctgagacagttgctgcagcaacatctatattgtcttat |
24474158 |
T |
|
| Q |
101 |
gtggaaccctcactggtccttccatttgtggcatctaggtttcaaatggcccttgagacggttagttgtgttgattgaatatttttcatggtagaatttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24474157 |
gtggaaccctcactggtccttccatttgtggcatctaggtttcaaatggcccttgagacggttagttgtgttgtttgaatatttttcatggtagaatttc |
24474058 |
T |
|
| Q |
201 |
agaaatcatatgtagtcagtggaattacaaagaataatattttcttcttggtaatatgtccactgagggata |
272 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24474057 |
agaaatcatatgtggtcagtggcattacaaagaataatattttcttcttggtaatatgtccactgagggata |
24473986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University