View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_66 (Length: 274)
Name: NF16904_high_66
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_66 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 3 - 258
Target Start/End: Complemental strand, 19202106 - 19201851
Alignment:
| Q |
3 |
atcaaacaaaggtacttggaagtaggattacattgaatctgtaacaaagaaaacagtctcaaacagaactagaataaataatatcatctcttgaatcaag |
102 |
Q |
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| T |
19202106 |
atcaaacaaaggtacttggaagtaggattacattgaatctgtaacaaagaaaacagtctcaaacagaactagaataaataatatcatctcttgaatcaag |
19202007 |
T |
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| Q |
103 |
cattacattcagtttatatattaatgaaaaatattctcaggtatgagacgttgaaagtgttgatagattcctgggaagacaagaagaggatgaaagcaaa |
202 |
Q |
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| T |
19202006 |
cattacgttcagtttatatattaatgaaaaacattctcaggtatgagaagttgaaagtgttgatagattcctgggaagacaagaagaggatgaaagcaaa |
19201907 |
T |
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| Q |
203 |
acgcaagctaatgaagcaagaggtttttctcagacacactttattaggtttaatag |
258 |
Q |
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| T |
19201906 |
acgcaagctaatgaagcaagaggtttttctcagacactctttattaggtttaatag |
19201851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 3 - 258
Target Start/End: Complemental strand, 19198122 - 19197867
Alignment:
| Q |
3 |
atcaaacaaaggtacttggaagtaggattacattgaatctgtaacaaagaaaacagtctcaaacagaactagaataaataatatcatctcttgaatcaag |
102 |
Q |
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||||| |||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||| |||||||||||||| |||||||||| |||||||| |
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| T |
19198122 |
atcaaccaaaggtacttggaagcaggattacattgaatttctaacaaagaaaacactctcaaacataactagaataaatattatcatctctagaatcaag |
19198023 |
T |
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| Q |
103 |
cattacattcagtttatatattaatgaaaaatattctcaggtatgagacgttgaaagtgttgatagattcctgggaagacaagaagaggatgaaagcaaa |
202 |
Q |
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| T |
19198022 |
cattacatgcagtttatatactaatgaaaaatattgtcaggtatgagaagtctaaagagttgatagattcctgggaagacaagaagaagataaaagccaa |
19197923 |
T |
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| Q |
203 |
acgcaagctaatgaagcaagaggtttttctcagacacactttattaggtttaatag |
258 |
Q |
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|||| |||||||||||||| |||||| |||||||||| ||||||||||||| |||| |
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| T |
19197922 |
acgcgagctaatgaagcaacaggtttctctcagacactctttattaggtttcatag |
19197867 |
T |
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