View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16904_high_69 (Length: 259)
Name: NF16904_high_69
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_69 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 35 - 223
Target Start/End: Complemental strand, 11859851 - 11859661
Alignment:
| Q |
35 |
gttatactattgatttgattcctaaaataaaagggcccaacctttgtttctgatatnnnnnnnnntt-aataaatatgatacgataatagggtatgagtg |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
11859851 |
gttatactattgatttgattcctaaaataaaagggcccaacctttgtttctgataaaaaaaaaaatttaataaatatgatacgataatagggtatgagtg |
11859752 |
T |
|
| Q |
134 |
actannnnnnnnnnnnnnn-aagggagtgactattaattataccataaaaacaaaaattatcaagtttaagttttaatttaatttttgtct |
223 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11859751 |
actatttttttttttttttgaagggagtgactattaattataccataaaaacaaaaattatcaagtttaagttttaatttaatttttgtct |
11859661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University