View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_72 (Length: 256)
Name: NF16904_high_72
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_72 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 45676143 - 45675904
Alignment:
| Q |
1 |
ctaactaagacattgccaaaatctattttcaatttttgtccttctagaaataaacccaaacattcatttaacttcacgcaaactcaattatacaaaggaa |
100 |
Q |
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| T |
45676143 |
ctaactaagacattgccaaaatctattttcaatttttgtccttctagaaataaacccaaacattcatttaacttcacgcaaactcaattctacaaaggaa |
45676044 |
T |
|
| Q |
101 |
aatgttgtttatcccgagaaacagtttcgtgaagcatagcgacagacaaccattggttatgataagcacgtgcacccctgatttccgc-taagaaacttc |
199 |
Q |
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| T |
45676043 |
aatgttgtttatcccgagaaacaacttcgtgaagcatagcgacagacaaccattggttatgataagcacgtgcatccctgatttccgcttaagaaacttc |
45675944 |
T |
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| Q |
200 |
tttcaattttgaccagcctatatagttttgacatttgtat |
239 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||| |
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| T |
45675943 |
tttcaagtttgaccagcctatataattttgacatttgtat |
45675904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 221
Target Start/End: Complemental strand, 40714711 - 40714584
Alignment:
| Q |
94 |
aaaggaaaatgttgtttatcccgagaaacagtttcgtgaagcatagcgacagacaaccattggttatgataagcacgtgcacccctgatttccgctaaga |
193 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||| | || |||||||||| | ||||||||| ||||||||| ||||||||||| |
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| T |
40714711 |
aaagaaaaatgttgtttatcccgagaaacagcttcgtgaagcatagcgagaaactaccattggttgttataagcacgcacacccctgaattccgctaaga |
40714612 |
T |
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| Q |
194 |
aacttctttcaattttgaccagcctata |
221 |
Q |
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|| | |||||||||| |||| |||||| |
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| T |
40714611 |
aattgttttcaattttaaccaacctata |
40714584 |
T |
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