View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_75 (Length: 254)
Name: NF16904_high_75
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_75 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 36941662 - 36941422
Alignment:
| Q |
1 |
ctcctgaatgtgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaaaccaataat |
100 |
Q |
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| T |
36941662 |
ctcctgaatgtgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaaaccaataat |
36941563 |
T |
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| Q |
101 |
taatgctcaagaaaatgaaataaacattgtggaatgggtttgggggctatatggaagagggagaattgttgaagcagtagatccaagactagatggagat |
200 |
Q |
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| T |
36941562 |
taatgctcaagaaaatgaaataaacattgtggaatgggtttgggggctatatggaagagggagaattgttgaagcagtagatccaagactagatggagat |
36941463 |
T |
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| Q |
201 |
tatgaagaggaacaaatcaagtgcatgatgattgttggtct |
241 |
Q |
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| T |
36941462 |
tatgaagaggaacaaatcaagtgcatgatgattgttggtct |
36941422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 36939456 - 36939702
Alignment:
| Q |
1 |
ctcctgaatgtgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaaaccaataat |
100 |
Q |
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| T |
36939456 |
ctcctgaatgtgctaccacaggaagagctagtaaagaaacagacgtgtatagttttggtattgttgctttagagatagcttgcggaagaaaacctataat |
36939555 |
T |
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| Q |
101 |
------taatgctcaagaaaatgaaataaacattgtggaatgggtttgggggctatatggaagagggagaattgttgaagcagtagatccaagactagat |
194 |
Q |
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| T |
36939556 |
aaaccttaaggctcaagaaaatgaaatacatattgtggagtgggtttgggggctatatggaagagggaaaattcttgaagcagtagatccaaaactagat |
36939655 |
T |
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| Q |
195 |
ggagattatgaagaggaacaaatcaagtgcatgatgattgttggtct |
241 |
Q |
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| T |
36939656 |
ggagattttgaacaagaacaaatcaagtgcatgatgattgttggtct |
36939702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 36949695 - 36949775
Alignment:
| Q |
11 |
tgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaa |
91 |
Q |
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| T |
36949695 |
tgctacaagaggaaaggctagtagagaatctgatgtatacagttttggagttgttgctttggaaatagcttgtggtagaaa |
36949775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 36959829 - 36959909
Alignment:
| Q |
11 |
tgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaa |
91 |
Q |
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| T |
36959829 |
tgctacaagaggaaaggctagtagagaatctgatgtatacagttttggagttgttgctttggaaatagcttgtggtagaaa |
36959909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 3054491 - 3054432
Alignment:
| Q |
20 |
aggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagc |
79 |
Q |
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| T |
3054491 |
aggaagggctagtaaagaatctgacatgtatagttttggaattgttgctttggagctagc |
3054432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 28294281 - 28294221
Alignment:
| Q |
17 |
cacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagata |
77 |
Q |
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| T |
28294281 |
cacaggtagggcaagtaaagagtcagatgtgtatagttttgggatagttgctttggagata |
28294221 |
T |
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