View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16904_high_77 (Length: 251)
Name: NF16904_high_77
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_77 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 49934258 - 49934497
Alignment:
| Q |
1 |
caagatttatagaagtgagtaaaatcaaacaattagatgaaaaaattgtatcgacgacaccaacctcaagcatgacatgggcatttccatgaagccaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49934258 |
caagatttatagaagtgagtaaaatcaaataattagatgaaaaaattgtatcgacgacaccaacctcaagcatgacatgggcatttccatgaagccaatt |
49934357 |
T |
|
| Q |
101 |
agcataaggggataaagctgttactagcatcattcccccatcttttatatcggcgtccactctaacttctccaacatctagaatttgtgaatataaacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49934358 |
agcataaggggataaagctgttactagcatcattcccccatcttttatatcggcgtccactctaacttctccaacatctagaatttgtgaatataaacct |
49934457 |
T |
|
| Q |
201 |
tcaaggctgtctgctaaccgagtattccaaaattcttcat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49934458 |
tcaaggctgtctgctaaccgagtattccaaaattcttcat |
49934497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 58 - 230
Target Start/End: Complemental strand, 1914098 - 1913926
Alignment:
| Q |
58 |
caccaacctcaagcatgacatgggcatttccatgaagccaattagcataaggggataaagctgttactagcatcattcccccatcttttatatcggcgtc |
157 |
Q |
| |
|
|||| |||||||||||||||| ||||| |||||||||||||| |||| ||| |||||||||||||| | | |||||||||||||||||||||| ||||| |
|
|
| T |
1914098 |
cacccacctcaagcatgacatcagcattaccatgaagccaattggcatgaggagataaagctgttaccaacgtcattcccccatcttttatatcagcgtc |
1913999 |
T |
|
| Q |
158 |
cactctaacttctccaacatctagaatttgtgaatataaaccttcaaggctgtctgctaaccgagtattccaa |
230 |
Q |
| |
|
| || ||||||||| |||||| |||||| ||| |||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
1913998 |
aatcctgacttctccagcatctaaaatttgccaatttaaacctttaaggctttctgctaattgagtattccaa |
1913926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University