View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16904_high_78 (Length: 251)
Name: NF16904_high_78
Description: NF16904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16904_high_78 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 34611421 - 34611177
Alignment:
| Q |
1 |
tgttaatgacatcaacttttgaagttggcttcaagcgcgagacctcatcaaccagtaaaacattccaacaacaatacatcaaaaaccaaaacgtatccac |
100 |
Q |
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| T |
34611421 |
tgttaatgacatcaacttttgaagttggcttcaagtgagagacctcatcaaccagtaaaacattccaacaacaatacatcaaaaaccaaaacgtatccac |
34611322 |
T |
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| Q |
101 |
aactagtagaacctgtaaaa-ggcaaaaaccttttatcgctatcaataaaccatggataataactgcgaaaactgaaagcaatagttggccgacagtacc |
199 |
Q |
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| T |
34611321 |
aactagtagaacctgtaaaaaggcaaaaaccttttatctctatcaataaaccatggataataactgtgaaaattgaaagcaatagttagccgacagtacc |
34611222 |
T |
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| Q |
200 |
aactctgtctctgaaaacaaattgggtagctgttattctgtgctg |
244 |
Q |
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| T |
34611221 |
aactctgtctctgaaaacaaattgggtagctgttattctgtgctg |
34611177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 34606342 - 34606283
Alignment:
| Q |
179 |
caatagttggccgacagtaccaactctgtctctgaaaacaaattgggtagctgttattct |
238 |
Q |
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| T |
34606342 |
caatagttggccgagagtaccaactctatctctgaaaacaaattgggtagatgttattct |
34606283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 34607201 - 34607151
Alignment:
| Q |
137 |
cgctatcaataaaccatggataataactgcgaaaactgaaagcaatagttg |
187 |
Q |
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||||||||||||| || ||||||||| || ||||||||||||||||||||| |
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| T |
34607201 |
cgctatcaataaatcaaggataataattgtgaaaactgaaagcaatagttg |
34607151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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